Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02122 ATGGTGAAGCATAACAACGTCATCCCCAGTGGACACTTCCGGAAACATTGGCAAAATTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGACGCTTAGCTCGGCAGAAGAAGGCTGTTAAAATTTTCCCCAGACCAACTGCTGGACCTCTCAGGCCTGTTGTTCATGGTCAGACTTTGAAATACAACATGAAAGTCAGAGCTGGGAGAGGATTTTCTCTTGAAGAATTGAAGAGTGCTGGCATTCCCAAAAAACTTGCTCCAACAATTGGGATTGCTGTTGACCATCGCCGCAAGAACCGTTCTTTGGAGAGCCTGCAGGCTAATGTGCAGAGGCTCAAAACATACAAGGCCAAGTTGGTTGTGTTCCCAAGACGGGCAAGGAAGGTCAAGACTGGTGATTCTAGTGCTGAGGAACTAGCAAATGCTACCCAAGTTCAGGGTCCATTTTTGCCCATTGTGAGGGAGAAGCCAACTGTTGACCTTGTTAAGGTAACAGATGAAATGAAGGCATTCAAAGCTTATTATAAGCTTCGTCTTGAACGCACCAACCAACGCCACTATGGTGCCCGTTTAAAGAGAGCTGCCGAAGCAGAGAAGGAAGACAAGAAATATTTGAAAAGGTCAAGTAAGAATGAGAATAGTCACAATAATGACTGCCAGGTTTCGTGTTTATAA 687 0.4498 MVKHNNVIPSGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRAGRGFSLEELKSAGIPKKLAPTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRARKVKTGDSSAEELANATQVQGPFLPIVREKPTVDLVKVTDEMKAFKAYYKLRLERTNQRHYGARLKRAAEAEKEDKKYLKRSSKNENSHNNDCQVSCL* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02122 228 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lapu3g02122 228 FunFam 60S ribosomal protein L13 166 207 - -
Lapu3g02122 228 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lapu3g02122 228 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lapu3g02122 228 MobiDBLite consensus disorder prediction 204 228 - -
Lapu3g02122 228 Gene3D - 167 207 - -
Lapu3g02122 228 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02122 Lapu-Chr3 41140268 41143340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02122 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 85.340 3.80e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02122 K02873 - gmx:100782333 385.571