Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02119 ATGGAGAATGATGAAGCTATGTTGAATGGGAGAGTGGGAAGCATACTAATCGCCATGGGTTCAGCAAGCTTCGTGATCACAATATTCCATCTCATCATGCTTTGTCGCACCCATCATCGTGATCATGTCAGCAACCAAAATCCTCCACAGCAAGAAGCTCGCAGCGTTAACGTTCCGGTGCTGCCACACCTCATTCCGGTCCACACCTACCAGAAGAAGAAGAAAAGCAATGATGAGGTGGCGGCGGAAGGCGAAGACGACGAAGATGGCACGTGCGCCGTGTGCTTGGGGGAGTTCGAGGAGGGTGAAGAGCTGAGGACGTTGCCGGAGTGCATGCACTCTTTCCACGTGGCTTGCATTGATAAGTGGCTCTCTTCCCGCTCCAGTTGTCCCGTTTGTCGCGCTCATGCCGCCACGCCCTCGCCGGCGGTTGAACACCCTTCGCCGGACCTTTCTTCCGCTGAGTTCAACGCGCATCACATCATAGATATGACGGAAATTGCTCGCTTTCAAACTGCTTCTGCGCCACCGATTTGCTTCAAGAAAAATAAATCTCTTCCCATTGATACCATATTCAAGCTTCCTGCACCTGTCGCAAGTTCTTCATGGCCTCCAGGTAGTGATTTTTCCAGTGGAAAAATTGATCTTGGTGGGTTACAAGTGTCTCAAATATCAACATTCAACAAAGTTTGGAGCGCCTACGGCGGTGGACTGGACGATAAAGGTTTCGCCATTTTTGAACCGTCAGGAATACCTCAAAATTTCTTTATGTTAGGTTGCTACAGCCAACCCAATAACAAGCCACTTTTTGGATGGGTTCTCGTGGCAAAAGATTTGTGCCCAGATACAAGCAACCCCATTTTAAAGCAACCAATTGATTTCACACTTGCATGGAACACTGCACGTATGTGGATTTACCAAGATGATCCAGTCCATGTTTGGCTTCCAACAGCACCTGATGGGTATAAAGCTGTAGGCTATGTTGTCACCACTACACCATATAAGCCTTCCCTTGACAAAATCAGGTGTGTCAGGTCAGACTTTACTGACCAATGTGAGACAGATTCATTAATTTGGAAATCAGGCAGCTTCAGTATCTATGATGTTAGACCAAGCATTAGAGGAATTCAATCTCCTGGTGTTAGAGTAGGCACATTTGTTGTTCAAAATGGGAGTACCAACCCTCAATCTATTGCTTGTTTGAAAAACAACAAAACTATCCCAAAATACATGCCTAATCTACAACAAATCAAGGCAATACTACAAGTTTACTCTCCAACTATATGCTTGCATCCTAGTGAAGATTACTTTCCATCATCAGTGGATTGGTTTTTCTCCAATGGCGCACTGCTATATAAGAAAGGGAAAGAGTTAAATCCTGTCCCAATAGCACCAAACGGCACAAACCTGCCTCAGGATCATAACAATGATGGTGTCTATTGGCTGGATCTTCCTGCTGATGCAGCCAACAAAGAGAGAGTGAAGAAAGGAAACTTGCGAGGTGCCAAAAGTTATGTGCATGTGAAACCAATGTTTGGAGGAACCTTTACTGACGTAGCAATGTGGGTTTTCTACCCATTCAATGGCCCTTCGAGAGCAAAAGTTAAGATAATTTCTTTTCAACTGGGGAAAATAGGTGAACATGTTGGCGACTGGGAACATGTGACACTAAGGGTAAGCAACTTCAGTGGTGAACTATGGCAGGTTTATTTCTCACAATACAGCGAAGGTACATGGGTCGATTCCTCTCAGATTGAGTTCCAAAGTGGTGGCAACAAACCACTATTCTATTCTTCCTTGCATGGCCATGCATTATACCCACATCCTGGCCTTAATCTACAAGGGGCAGATAACGTAGGCATAAGGAATGATACTGCTAATGGTAAGAATGTTATGGATATGGGAGCATTTGAATTGGTTTCTGCGGAATATTTGGGTTCTGCAGTTATAGAGCCTCCTTGGCTGAACTATTTCGGATACTGGGGTCCTAAAATTGATTATAACGTAGTTGTTGAGCTGAAGAAGATTGAGAAGTTCGTGCATAAGAATAAAACTTGTACTTTGGAAAAGATTTTAAGGAGTTTGCCAGGTGAGGCACTGGGAGAGGAAAGGTCCACAGGTCCAAAGGTGAAGAATAATTGGAGTGGAGATGAAATTTGA 2160 0.4463 MENDEAMLNGRVGSILIAMGSASFVITIFHLIMLCRTHHRDHVSNQNPPQQEARSVNVPVLPHLIPVHTYQKKKKSNDEVAAEGEDDEDGTCAVCLGEFEEGEELRTLPECMHSFHVACIDKWLSSRSSCPVCRAHAATPSPAVEHPSPDLSSAEFNAHHIIDMTEIARFQTASAPPICFKKNKSLPIDTIFKLPAPVASSSWPPGSDFSSGKIDLGGLQVSQISTFNKVWSAYGGGLDDKGFAIFEPSGIPQNFFMLGCYSQPNNKPLFGWVLVAKDLCPDTSNPILKQPIDFTLAWNTARMWIYQDDPVHVWLPTAPDGYKAVGYVVTTTPYKPSLDKIRCVRSDFTDQCETDSLIWKSGSFSIYDVRPSIRGIQSPGVRVGTFVVQNGSTNPQSIACLKNNKTIPKYMPNLQQIKAILQVYSPTICLHPSEDYFPSSVDWFFSNGALLYKKGKELNPVPIAPNGTNLPQDHNNDGVYWLDLPADAANKERVKKGNLRGAKSYVHVKPMFGGTFTDVAMWVFYPFNGPSRAKVKIISFQLGKIGEHVGDWEHVTLRVSNFSGELWQVYFSQYSEGTWVDSSQIEFQSGGNKPLFYSSLHGHALYPHPGLNLQGADNVGIRNDTANGKNVMDMGAFELVSAEYLGSAVIEPPWLNYFGYWGPKIDYNVVVELKKIEKFVHKNKTCTLEKILRSLPGEALGEERSTGPKVKNNWSGDEI* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02119 719 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Lapu3g02119 719 PANTHER F1C9.34 PROTEIN 177 718 - -
Lapu3g02119 719 Pfam Ring finger domain 91 134 IPR001841 -
Lapu3g02119 719 SUPERFAMILY RING/U-box 91 140 - -
Lapu3g02119 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 140 IPR013083 -
Lapu3g02119 719 SMART ring_2 92 133 IPR001841 -
Lapu3g02119 719 MobiDBLite consensus disorder prediction 700 719 - -
Lapu3g02119 719 Pfam Vacuolar protein sorting-associated protein 62 189 718 IPR009291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02119 Lapu-Chr3 41105188 41110259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02119 65 134 C3H Transcription Factor Family AT2G17450 52.857 2.00e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02119 - - gmx:100808166 918.302