Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02109 ATGGGTTCCAATGGTAGCAAAACCACTTCTTCTTCTTCTTCTTCGTCGACGTCGTCGTCGTCGGGGAGTATAAGGAAGGGTCGATCTAAGGGCCTTAGAGTTTTTCAATCTTATTGTCTTGGAACTAGTTCCGGTTCTCACGACAGTGATAATGAAGACCAGGTTTGTGACCAGAATAAAGTAAACGGCAGCGATGTTACATATGCTAACGGCAATGTAACAAATTCATACGAGGTGAAAGGAGACTCATTTAGAAAGGTTAAAGCTAGTGAAATGACTTTTATGCCTTCTAACATTGACCTTCATGAATGGGGAGAAACAAGCATCCCCAACACTTCATCCAGAACTGCTAGCAGCTCTATTCATGATTCTTCAACTCATTCCTTGAACCATACAAGTCATTTCCTTTCTCAGCTTAGCCTCATTCCTGGTAGTCTAAGCTTCAGACTTAGCAGAACCACCAGTTTGGGGTCATCAAGGCCTTGTCCTGTTTCTTCTGCAAGTCTCTCAATATTTGACAATGAAAATGAGTGTAATCTCCATCCTGGATCTCCTGGAAGTTCGATTAATATAAGTGAAACACAACAACGCAATAACCTGCTTCCTGCTTCTTTTTTCAATCAAATACATGCACAATCTCTTGAAGACGCATCTAATAATTTAAGGTCAAATGTCCCAACATCAGGTACACTTCGAAACTTGCAGAGAAATCCCACAGACAGAATTCGCACAAGAGAAGGGTTGGATGCGAACTTATTTTCTCCAAGAATTCAAACTGAGAGAGAAATTGTTGACACTAGACATATTGATCGACGAAACAGTGCTCAAGAATCGGTTGAACAGAATGTTCATTTTAGCCGAACTTTAAGTGTTGGAAGACTTCGTGACAGAGTTCTTCGTCGATCAACATTTTCTGACATCACCTTTTGCCCTCTTCAACAGGAGAGAGAGCTGAGAGATGATAGCCTCCATAGCCAGGATATTGACAGGCAATCAGTGGAGGGAGATTCGAGAGTGTTACCTTCTGATCATACTACCTTTAATTCTTCTACATCTAGCATGTCTAACTCCTTGTTTAGTATCCAAGACAATGAGGTTGAGACTTCACGAGTGAGAGAAGGTAGGTATCAGGATCTAGTGGAGCATAGGTCCAATTTCCTTGAACGCAGAAGAAGAATGCGGTCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGATAGATCATGTATCTTGTCTGGTCAACATAGAAATGGTCATTGTACATGCGGAATCAATAATCGTAACACTAATTCAAATGATGATACCGGTGCTCGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTTGTTTTGTCTTCCCGCCCATCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCGATTCCTTGCCTGTCAAGTTATATGAGAAGTTGCACAAACATCATGAGGATGGCGCACAATGCTATATATGCCTTGTGGAGTATGAGGACGGAGACAACATGCGAGTACTGCCGTGTCATCACGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGTCCACTTTGTAGAGGGGACATATGCATATCGGATGCAACACCAACAGAGAACTGGAGTGGGTAG 1716 0.4219 MGSNGSKTTSSSSSSSTSSSSGSIRKGRSKGLRVFQSYCLGTSSGSHDSDNEDQVCDQNKVNGSDVTYANGNVTNSYEVKGDSFRKVKASEMTFMPSNIDLHEWGETSIPNTSSRTASSSIHDSSTHSLNHTSHFLSQLSLIPGSLSFRLSRTTSLGSSRPCPVSSASLSIFDNENECNLHPGSPGSSINISETQQRNNLLPASFFNQIHAQSLEDASNNLRSNVPTSGTLRNLQRNPTDRIRTREGLDANLFSPRIQTEREIVDTRHIDRRNSAQESVEQNVHFSRTLSVGRLRDRVLRRSTFSDITFCPLQQERELRDDSLHSQDIDRQSVEGDSRVLPSDHTTFNSSTSSMSNSLFSIQDNEVETSRVREGRYQDLVEHRSNFLERRRRMRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCGINNRNTNSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNDVVDSLPVKLYEKLHKHHEDGAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGDICISDATPTENWSG* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02109 571 SMART ring_2 513 554 IPR001841 -
Lapu3g02109 571 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 567 - -
Lapu3g02109 571 FunFam Putative RING zinc finger domain superfamily protein 482 560 - -
Lapu3g02109 571 MobiDBLite consensus disorder prediction 320 337 - -
Lapu3g02109 571 SUPERFAMILY RING/U-box 491 561 - -
Lapu3g02109 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 560 IPR013083 -
Lapu3g02109 571 MobiDBLite consensus disorder prediction 1 29 - -
Lapu3g02109 571 MobiDBLite consensus disorder prediction 1 26 - -
Lapu3g02109 571 ProSiteProfiles Zinc finger RING-type profile. 513 555 IPR001841 -
Lapu3g02109 571 MobiDBLite consensus disorder prediction 43 64 - -
Lapu3g02109 571 MobiDBLite consensus disorder prediction 338 355 - -
Lapu3g02109 571 Pfam Ring finger domain 512 555 IPR001841 -
Lapu3g02109 571 MobiDBLite consensus disorder prediction 320 355 - -
Lapu3g02109 571 MobiDBLite consensus disorder prediction 105 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02109 Lapu-Chr3 40925676 40930570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02109 245 564 C3H Transcription Factor Family AT5G45290 62.080 1.67e-117 357