Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02088 ATGGAGAAATCAAGGTCTTCAGACCAAGTTGTTCTCTTCATCGACCAACATAATCCTAAACCATCCTCCATGGAAACCGAAAATCATCAAGAGAAACCCAGACACCCCTTAAAAGTCAGAACTCTTAACCGTCTCAACTTCTCAAAACCCAAATCTCGAATCCAAGAGTACAACTATGTTCCCCACAACAAATTTGCAGCCTCTGAAGAAGGTGACATTATCCAACCCACCTATAAGCTCACTTCCAATGACGACGACGACGACGAAGATGACTCCAAATGGGACAAGGAGGAGATGGAAGAGGATGGCTCAGAACATAACCCAAAGTTGCACCAGAAGAGGAAGTTCAGAATCAAGTGGAGGCTCATGATGGAGTGGGCTTTGTTTCTCAATATATTGGCATGCTTGGTGTGTTCTTTGACCATATCTTCCATAACCAACATGCACGTGTTGGGATTGGAGATTTGGAGGTGGTGTGTGATGGTAATGGTTACATTCAGTGGTCGTCTGGTTTCAGGGTGGCTAGTTGGTGTCATAGTTTTCTTCCTTGAACGAAACTTCATGCTCAGGGATAAAGTGTTGTACTTCATCTACGGGCTTAGAAAGAGCATAAGAAACTGTTTGTGGTTAGGCCTCGTGTTAATCTCCTATTGGAGCTTGGTATTCGACGATGTCCAAAAGAAGAACCACAAGTTTCTGAACAAGATGTTTCAGGCGTTGGTGGCAGTTCTGGTGGGCGCAACCATTTGGCTGGTGAAGATCGTGCTGGTGAAGATGCTGGCATCTTCGTTCCACGTGACCACATATTTTGACAGAATGAAGGAGAGTGTTTTCCATCACTACATTTTGGATACATTGTCAGGTCCACCGATGGAAGACGCTGAGGAGATATTGCATCAGCACCACCTGATGGGGTCCAAGTCCTTGCCTGCGAGGTTAAAGATGAAGGAAGCGAAGAACTTGCACAAGTCCAAGAGATTTGGATCGAGGAAGATCGACATGGAGAAGTTGAGAGAGCTCAGCATGGAGAGCCCTGCGTCTGCATGGAGTGTGAAGAGACTTGTTAACTATGTCAGATCTTCGGGCTTGTCTACCATTTCCAGGACTGTGGATGATTTTGGCAATGCTGAGTCTGAGATTAGCAGCGAGTGGGAAGCTAGAAACTGCGCTCAGAGGATTTTCAAGAATGTTGCCAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTGATGAGATTTTTGAAGAGGGTAGAGATACATACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACAGGACAGATCAGCAGGTCTTCATTCAGAAATTGGGTGATTCGAGCATATTATGAACGAAAAGCCCTAGCACAATCACTGAATGATACCAAAACAGCAGTGCAACAGCTTCACAAAATAGCTAGTGCAGTGGTTAGCGTGATAATAATCATTGTGATGCTTTTGGTGATGGAGGTGGCCACACTCAAGATAATATTATTCTGCATCACACAAACAGTTCTCATAGGTGTTGCCTTCCAAGGTACCTGCAAGACTGTGTTGGAGGCCATCATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGAGACCGTTGCGTCATTGATGGAGTTCATATGATCGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAAATATACTACCCTAATGCAGTTTTGCTCTCTAAGCCAATAAGCAATTTCTATAGGAGTCCAGAGATGGGGGATTCGGTTGATTTCACCATCGATGTTTCAACTTCCATGGAGACCATCCTTGCCCTCAAGAAATCAATACAAATGTACATTGAGAGCAAACCCAAGTATTGGAATCCAAAACACAGTTTGGTAGCAAAAGGAATTGATAATGTGGACAAGCTAAAGTTTGCCTTATGTGTGCAACATACGATCAACCATCAGAACTACGGTGAGAGAAATGTTAGGATAACTGAGCTTCTCTTGGAACTGAAGAGAATCTTTGAGATCCATGGTGTCAAGTACCATCTTCTTCCTCAGGAGATCCAGATCACCCATATGAATATTGAACATGGCAAAGTTCTGTTTCAATCATGA 2100 0.4348 MEKSRSSDQVVLFIDQHNPKPSSMETENHQEKPRHPLKVRTLNRLNFSKPKSRIQEYNYVPHNKFAASEEGDIIQPTYKLTSNDDDDDEDDSKWDKEEMEEDGSEHNPKLHQKRKFRIKWRLMMEWALFLNILACLVCSLTISSITNMHVLGLEIWRWCVMVMVTFSGRLVSGWLVGVIVFFLERNFMLRDKVLYFIYGLRKSIRNCLWLGLVLISYWSLVFDDVQKKNHKFLNKMFQALVAVLVGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILDTLSGPPMEDAEEILHQHHLMGSKSLPARLKMKEAKNLHKSKRFGSRKIDMEKLRELSMESPASAWSVKRLVNYVRSSGLSTISRTVDDFGNAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGQISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAVVSVIIIIVMLLVMEVATLKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPEMGDSVDFTIDVSTSMETILALKKSIQMYIESKPKYWNPKHSLVAKGIDNVDKLKFALCVQHTINHQNYGERNVRITELLLELKRIFEIHGVKYHLLPQEIQITHMNIEHGKVLFQS* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02088 699 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 25 689 IPR016688 -
Lapu3g02088 699 MobiDBLite consensus disorder prediction 83 98 - -
Lapu3g02088 699 MobiDBLite consensus disorder prediction 1 38 - -
Lapu3g02088 699 SUPERFAMILY Sm-like ribonucleoproteins 520 578 IPR010920 -
Lapu3g02088 699 MobiDBLite consensus disorder prediction 76 108 - -
Lapu3g02088 699 FunFam Predicted mechanosensitive ion channel 529 578 - -
Lapu3g02088 699 MobiDBLite consensus disorder prediction 22 38 - -
Lapu3g02088 699 PIRSF Memb_At2g17000 16 697 IPR016688 -
Lapu3g02088 699 Gene3D - 529 578 IPR023408 -
Lapu3g02088 699 Pfam Mechanosensitive ion channel 470 675 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02088 Lapu-Chr3 40417104 40422914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02088 4 689 Mechanosensitive Ion Channel Family AT5G12080 42.777 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02088 K22048 - gmx:100813521 1229.54