Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02075 ATGGTTAATGTTGACTTAAATCTGCCATTGTCTGACAAGGAAATTCTTGTCCAGAAAGAACCTGTTCCTCTTGCTAAAAAGGTTTTACCTGAGTTACAAATACAAATTACCCTTGAAGGTGCTCCAGAAGCAGTTTCTGGTGACAAATGTTCTCAAAGAAGGAGATCAACTGCAAATCAAAAGTCGAAAAGCTCAAGAAATTCAAAGGCCAAAATATCTAAGAGGCAAAGCAATGGATTGCCATCAATGGAACAAGGTTCAAGCAAGAAGGTCGCTAGGGGGTCTGCTCCTGACCTTTTAGCACTTGCTAAACCTCTAAATATTTTTTCTTGGTTGATGGACAACAAGATGATCTTTCCAAGGTCTACCGTTTATTATTACAATGAAAAAGTATGGCACCATGCAGCCCCTAGTTGGACTAGGGGGAAAATAACTCGCAATGGAATCAAGTGTTACTGTTGTGACATAATGTACAATCTTGCTGACTTTGAAATTCATGCTTGTGGCATCAGTACCTGCAGACCCTCCGCTAGTATTTTTTTGAGAGATGGTAAATCACTCTTAGAATGCCAAATAGAAATAATGCAAAATCGCATTACAAGAGAAACTAGTGAAAAATCATGCAGAGATTTGTATCTACCCGAGAATGACTTCGTTTGTTCCGTTTGCCTCTATGGTGGTGAACTTATGTTATGTGATAAATGCCCATCGGCATTTCACAATACGTGTCTTGGGTTGGAGAATATCCCTGATGGTGATTGGCATTGCCCACAATGTCGTTGCGCTATTTGTGACCAAAGCAAAGTAGATGAACATGCCCTTACTTGTGTTCAGTGTCAACGTAATTACCATGTTTGGTGTCTGCAAAATGGAGGTATAGATATATCAAGATGTCCAGAAAACTGGGTCTGTGGAAGAGACTGCGAAAGGATACACCACGGCCTCCATCAGCTATTAGGAAAGCCAACTCAAGTGGGTGTGGACAATCTAACGTGGACATTGGTGAAGTTTATCAAGCCTGAGTATGATGAACTTGGTGGAATTAGAAGTGACAGCTCAATGGCAGAAAGTTACTGCAAACTCAATCTTGCGCTTTCAGTGATGCATGAATGTTTTGAGTCCCTGAAGCAAACTTTAACCAGCTCAGATTTCATAAAAGATGTTATGTTCAACAGAAGGTCAGATCTGAGGCGGTTAAATTTTCAGGGTTTCTATACTGTGCTACTTGAGAGAAATGAAGAACTGGTTTGTGTGGCAATTGTTAGGGTCCATGGGGAGAAGGTAGCAGAAGTACCTCTTGTTGGTACCAGATTACACCATCGTCGACGTGGATTTTGTCGCGTTCTAATGAGTGGGCTTGAACAGTTGCTCAGGCAATTAGGTGTGGGGAGGCTTGTGTTGCCTGCTGTTCCTAGTACGCTGAAGACATGGACTGGCTCTTTCGGCTTCGAAAAGATGACCAGTTTGGAGAGGTCTAAATTTCTGGACTGCACCTTCTTAGATTTTGAGGGTAGCATCATGTGCCATAAGCCATTGATGGCGATTCCACCTCCATATTCAGAGCCACAACCCAGAACTGATGTTTTACCTGAAAGTAGTCTTAACCTCAATCAGCCTATTCCAGAATCAGAAGGAGGGATGTTGCATCAGCAAACTGAGAATACTTCTACAAGCAACAACGAGGATCATGTTATTCGTGTTAATGTTCCAATCACTATGGAGAAAGACATTCCTGATGATCAACGGTATCTCAATGGAAGAATCTCATCAGAGTTCTTTTATGGAAGCAGCTCATCAGAGCTCCTTCCCGGAAGCAGCTCATTAGCGCTCCTTCCCGGAAGCAGCTCATCACGGTTCCTTCCCGGAAGCAGCTCATCACGGTTCCTTCCCGGAAGCAGCTCATCACGGTTCCTTCCCGGAAGCAGCTCATCACGGTTCCTTCCCGGAAGCAGCTCATCACGGTTCCTTCCTGGAAGCAGCTCATCACGGTTCCATCCTGGAAGCAGCTCATCACGGTTCCTTCCTTGA 2028 0.4359 MVNVDLNLPLSDKEILVQKEPVPLAKKVLPELQIQITLEGAPEAVSGDKCSQRRRSTANQKSKSSRNSKAKISKRQSNGLPSMEQGSSKKVARGSAPDLLALAKPLNIFSWLMDNKMIFPRSTVYYYNEKVWHHAAPSWTRGKITRNGIKCYCCDIMYNLADFEIHACGISTCRPSASIFLRDGKSLLECQIEIMQNRITRETSEKSCRDLYLPENDFVCSVCLYGGELMLCDKCPSAFHNTCLGLENIPDGDWHCPQCRCAICDQSKVDEHALTCVQCQRNYHVWCLQNGGIDISRCPENWVCGRDCERIHHGLHQLLGKPTQVGVDNLTWTLVKFIKPEYDELGGIRSDSSMAESYCKLNLALSVMHECFESLKQTLTSSDFIKDVMFNRRSDLRRLNFQGFYTVLLERNEELVCVAIVRVHGEKVAEVPLVGTRLHHRRRGFCRVLMSGLEQLLRQLGVGRLVLPAVPSTLKTWTGSFGFEKMTSLERSKFLDCTFLDFEGSIMCHKPLMAIPPPYSEPQPRTDVLPESSLNLNQPIPESEGGMLHQQTENTSTSNNEDHVIRVNVPITMEKDIPDDQRYLNGRISSEFFYGSSSSELLPGSSSLALLPGSSSSRFLPGSSSSRFLPGSSSSRFLPGSSSSRFLPGSSSSRFLPGSSSSRFHPGSSSSRFLP* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02075 675 MobiDBLite consensus disorder prediction 538 563 - -
Lapu3g02075 675 Pfam PHD-finger 220 261 IPR019787 -
Lapu3g02075 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 311 IPR013083 -
Lapu3g02075 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 261 IPR013083 -
Lapu3g02075 675 SMART ring_2 220 259 IPR001841 -
Lapu3g02075 675 SMART ring_2 261 301 IPR001841 -
Lapu3g02075 675 Gene3D - 361 489 - -
Lapu3g02075 675 MobiDBLite consensus disorder prediction 621 675 - -
Lapu3g02075 675 Pfam Tify domain binding domain 142 193 IPR032308 -
Lapu3g02075 675 ProSiteProfiles Zinc finger PHD-type profile. 217 262 IPR019787 -
Lapu3g02075 675 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 402 491 IPR016181 -
Lapu3g02075 675 SUPERFAMILY FYVE/PHD zinc finger 213 261 IPR011011 -
Lapu3g02075 675 SMART PHD_3 261 308 IPR001965 -
Lapu3g02075 675 SMART PHD_3 219 260 IPR001965 -
Lapu3g02075 675 MobiDBLite consensus disorder prediction 51 89 - -
Lapu3g02075 675 PANTHER PHD FINGER PROTEIN 12 60 640 IPR042163 GO:0003714|GO:0045892
Lapu3g02075 675 MobiDBLite consensus disorder prediction 45 89 - -
Lapu3g02075 675 CDD NAT_SF 407 467 - -
Lapu3g02075 675 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 356 501 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02075 Lapu-Chr3 40197817 40204432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02075 105 460 PHD Transcription Factor Family AT5G58610 46.612 2.08e-100 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu3g02075 TDBD 4.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02075 - - var:108323857 824.313