Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02072 ATGTACGAAGAAAGTAGTTGCTTTGATCCCAATGGGATGGTGGCAGAAGACTGTTTTTCCCAGATGGTTTCAAAATCAGAGGCAGTTATGTCTGTGACTAGCATACAGCCCCACAACACCTTTGGGATGGAAAACTTAGCCTACACATATTCCAGTGGAGAAGATGCTTCTGCTGTTGCTATGGAAATCATTGCACACCCCCAACAGAACTCATACAATCAAGACAATAACTTGAACCCCCAGTTTGTGCAAGTGGTGAACAACCATGGTTCATGTGAGGAGCTTTATTCTTTCCCCCCTCACTCCTCCACACTTGAGAGGGGTCACCATGATCACCAATTTCCTTACTCCACACCAACACCAGATCTCCTCAACCTTCTCCACTTGCCAATGACCTTTGAAAACCAAAGCAGCAATCTTCCGAAACCCTCTGGCCCAATGGGAACAGCAGACAGCACAAACGTCTCCTCTGTTTCCTATGACCCTTTCTTGCATCTCAACCTGCAAGCACCTCCCCCAGCTATCAGAAATGATTTTGCCTTTGGAGGAGGGGGTGCCATAGAAGGCAGTGGAATTGCCTACCAAGATTTTGGAAATGGGGTTGTGGAGTTCACTCAAGATGTTGGGAAAAAGAGAGGGGGCAAAAGGACCAAGCAGTTTACCAGTACCACCACTGAGAGACAAAGGAGAGTGGATTTGAGTAGTAAATTTGATGCTTTGAAAGAACTCATCCCAAACCCCTCCAAGAGTGATAGAGCATCCGTGGTGGGAGATGCTATTAACTATATCAGAGAGCTGAAGAGGACAGTGGACGAACTAAAATTACTGGTGGAGAAGAAAAGGCACGAGAAACAAAGGGTAGTAGTGATGATGAGGCAAAAGGTTGAAAATGAAGGGCAAGGTGACTCCAATCTCGACCCAGATGATGGTTCCTACAATGAAAGCTTAAGAAGTTCTTGGATACAAAGGAAATCCAAAGACACAGAGGTTGATGTGCGCATTGTTGACAATGAGGTAACAATCAAGCTTGTTCAAAGGAAGAAGATGGATTGCTTGGTGCATGTCTCACAGGTTCTTGATCAACTCAACCTCGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGTTATCTGTTCAATACCAAGATGTGTGACGGTTCTTGTGTTTATGCAAGCGCTATAGCCAACAAGCTCATTCAGGTCATGGACACAAGTTTGGCAGCAGTGTGA 1239 0.4552 MYEESSCFDPNGMVAEDCFSQMVSKSEAVMSVTSIQPHNTFGMENLAYTYSSGEDASAVAMEIIAHPQQNSYNQDNNLNPQFVQVVNNHGSCEELYSFPPHSSTLERGHHDHQFPYSTPTPDLLNLLHLPMTFENQSSNLPKPSGPMGTADSTNVSSVSYDPFLHLNLQAPPPAIRNDFAFGGGGAIEGSGIAYQDFGNGVVEFTQDVGKKRGGKRTKQFTSTTTERQRRVDLSSKFDALKELIPNPSKSDRASVVGDAINYIRELKRTVDELKLLVEKKRHEKQRVVVMMRQKVENEGQGDSNLDPDDGSYNESLRSSWIQRKSKDTEVDVRIVDNEVTIKLVQRKKMDCLVHVSQVLDQLNLDLQHVAGGHIGDFCSYLFNTKMCDGSCVYASAIANKLIQVMDTSLAAV* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02072 412 PANTHER TRANSCRIPTION FACTOR BHLH91 1 411 IPR045895 GO:0006355|GO:0048658
Lapu3g02072 412 Coils Coil 263 283 - -
Lapu3g02072 412 CDD bHLH_AtMYC1_like 224 282 IPR045896 -
Lapu3g02072 412 Pfam Helix-loop-helix DNA-binding domain 225 266 IPR011598 GO:0046983
Lapu3g02072 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 286 IPR036638 GO:0046983
Lapu3g02072 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 266 IPR011598 GO:0046983
Lapu3g02072 412 Gene3D - 209 297 IPR036638 GO:0046983
Lapu3g02072 412 SMART finulus 223 272 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02072 Lapu-Chr3 40120061 40121969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02072 1 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 41.099 1.76e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g02072 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02072 - - vra:106767981 778.089