Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02070 ATGTCAACTCCACTATCTTCATCACCATCACCATCACCGGCATCATTCACCACCGCACTGCCACCACAATTATCTTCTCCTATACCACCTTTATTGTCACCTTCACTCTCACCGTTACCATCTCAGTCCTTACCTCCAGCTACTACTCCACCGGCACCACCACCTGTAGTGTCACCGCCACTATCACTATCACCACAATCGTCAAGTTTTCCACCAGCATCAATTTCTTCTCCTCCGCCACCTCCTCAGAGTCATTCTCCTTCTCCGGAAGCATCTGCTACACCTGTAAGAAGTAGTGCACCTCCTCCACCTTCTAGGACTAGTCCTTTACATTCTCATTCTACTTCATCACACACTTTTGCATTGGCTCCACCACCTCCATCATCAGCAAGATATTCTGGCCCAGCAAGCAGTGGTGGAACAAGTGCAGTGGCTTTTGTTGGTGTAGTGACAGCAATTGTATTGTTTGGCTTCATTGGCATTGCTATCTGGTGCCAGAGGAGGCAAAAGAAAAGGATTTCTAAGAGTGGCGGTTATGACTTCCCATCCCCTCTTGGCTCAACATCTGAGTCAGATTTGTCCTTTATTAAGATCCGTTCTTCAGCTCATCGTGCGCAAATAGCTTCTGGCGGTAATACACCATCAGGAATGAGCAACTCAAGATCATTCATGGCATATGAAGAACTAATGAACGCAACAAACAATTTTTCAACTCAAAATCTTTTGGGTGAGGGAGGATTTGGTTGTGTGTATAAAGGATCACTTCCAGATGGGAGAGAGGTAGCAGTTAAGCAACTGCAAATTGCAGGAAGTCAAGGAGAGAGAGAATTCAAAGCTGAAGTGGAAATTATTAGCCGCATACATCATCGTCATTTGGTTTCCTTAGTAGGATACTGCATTTCAGAGAACAAAAGACTACTTGTCTATGACTATGTTCCCAACAGTACCCTTTATTTTCATCTTCATGGAGAAGGTATGCCAGTGCTGGAGTGGAAAAACCGTGTTAAAATTGCGGCTGGAGCAGCCAAAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGGGATATCAAGTCTGCAAACATTCTTTTAGAATACAACTTCGAAGCTCGAGTCTCAGATTTTGGTCTAGCCAGATTAGCAGTTGATGCAAATTCACATGTAACCACACGTGTGGTGGGCACTTTTGGATATGTTGCGCCTGAATATGTATCAAGTGGTAAATTCACCGAGAAGTCAGATGTATACTCTTTTGGAGTCATGCTTTTGGAGCTCATTACTGGAAGGAAGCCAGTGGATGTATCTCAACCAGTGGGTGAAGAAAGTCTAGTTGAATGGGCTCGACCTTTGCTAAATGATGCACTTGAGAGTGAGGAATTTGAGATTTTGACAGATCCAAAGCTAGGAAAAAGGTACGTTGAAAGTGAAATGATTTGCATGGTTGAAGTTGCTGCTGCTTGCGTGAGACATTCATCTGCCAGAAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATGGTTTAGCTACGTGTGATCTTTCAAATGGAATGAGAGTTGGGGACTCTACGCTGCAATCCGCAGAAATAAGATTGTTACGTAGGATGGCATTTGGTAGCCAAGATTACAACCCAGAACTTTTAAGCCACATAAGTTTGAATACGTAA 1677 0.4389 MSTPLSSSPSPSPASFTTALPPQLSSPIPPLLSPSLSPLPSQSLPPATTPPAPPPVVSPPLSLSPQSSSFPPASISSPPPPPQSHSPSPEASATPVRSSAPPPPSRTSPLHSHSTSSHTFALAPPPPSSARYSGPASSGGTSAVAFVGVVTAIVLFGFIGIAIWCQRRQKKRISKSGGYDFPSPLGSTSESDLSFIKIRSSAHRAQIASGGNTPSGMSNSRSFMAYEELMNATNNFSTQNLLGEGGFGCVYKGSLPDGREVAVKQLQIAGSQGEREFKAEVEIISRIHHRHLVSLVGYCISENKRLLVYDYVPNSTLYFHLHGEGMPVLEWKNRVKIAAGAAKGIAYLHEDCNPRIIHRDIKSANILLEYNFEARVSDFGLARLAVDANSHVTTRVVGTFGYVAPEYVSSGKFTEKSDVYSFGVMLLELITGRKPVDVSQPVGEESLVEWARPLLNDALESEEFEILTDPKLGKRYVESEMICMVEVAAACVRHSSARRPRMGQVVRAFDGLATCDLSNGMRVGDSTLQSAEIRLLRRMAFGSQDYNPELLSHISLNT* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02070 558 FunFam proline-rich receptor-like protein kinase PERK8 312 523 - -
Lapu3g02070 558 Pfam Protein tyrosine and serine/threonine kinase 238 507 IPR001245 GO:0004672|GO:0006468
Lapu3g02070 558 MobiDBLite consensus disorder prediction 23 61 - -
Lapu3g02070 558 SUPERFAMILY Protein kinase-like (PK-like) 216 507 IPR011009 -
Lapu3g02070 558 MobiDBLite consensus disorder prediction 1 137 - -
Lapu3g02070 558 ProSiteProfiles Protein kinase domain profile. 236 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02070 558 Gene3D Transferase(Phosphotransferase) domain 1 312 522 - -
Lapu3g02070 558 SMART serkin_6 236 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g02070 558 SUPERFAMILY beta-sandwich domain of Sec23/24 7 119 - -
Lapu3g02070 558 ProSitePatterns Protein kinases ATP-binding region signature. 242 264 IPR017441 GO:0005524
Lapu3g02070 558 MobiDBLite consensus disorder prediction 1 22 - -
Lapu3g02070 558 MobiDBLite consensus disorder prediction 109 123 - -
Lapu3g02070 558 PRINTS Proline rich extensin signature 3 15 - -
Lapu3g02070 558 PRINTS Proline rich extensin signature 43 55 - -
Lapu3g02070 558 PRINTS Proline rich extensin signature 22 38 - -
Lapu3g02070 558 PRINTS Proline rich extensin signature 71 92 - -
Lapu3g02070 558 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 153 539 IPR047117 -
Lapu3g02070 558 Gene3D Phosphorylase Kinase; domain 1 199 311 - -
Lapu3g02070 558 FunFam Proline-rich receptor-like protein kinase PERK8 209 311 - -
Lapu3g02070 558 MobiDBLite consensus disorder prediction 72 88 - -
Lapu3g02070 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02070 Lapu-Chr3 40091175 40100234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02070 140 551 Trihelix Transcription Factor Family AT5G38560 60.606 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lapu3g02070 PK_Tyr_Ser-Thr 5.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02070 - - gmx:100799296 716.072