Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02065 ATGAGGGGCTTGAAGGGTAGAGGTAGAGTTATTTTCCTTGTGACAGTGCTGATTTCTGTGTTGGCATCAGAGGTGCTGATTTTGGAGGCTGAGGGTGCTGGTGAGTGTGGAAAGACCCCTATAGGGTCTGCAGCTGCTAGTCTTAGCCCTTGCTTGAGTGCTGTAAGCAATGTGAAGGCAAAGGTTCCTTTGGCTTGTTGTGCCAGAGTTGGTGCTTTGCTCAGCACTGCTCCAAGATGCCTCTGTGCTGTTCTGTTGTCTCCTTTGGCCAAGCAAGCTAAGATCAACCTTGCCACTGCTATCACCATTCCAAAGAGATGCAACATCAAGAACCGTCCTGCAGGAAAGAAATGTGGAAATGAACTCGACCTACTCACTGAGTTCAACCGAGTCACCGAGCTGTTCCACCTTGCGTTCGGTGGCACCAATGTCGTCATTCCCCCCAACTCCTTTGGGCTTCAACTCGGTGCACCTGCATGCTCCGACCCTCTTCCTTCTGCCACGGATGTCAATTCCGTGGTTCTGCAAGACCCCAAGTGCTCCTCCTCCGCGAGCGACGACTCGCGCGCGATCGTCCCCGTCGCGGACGGCACGGTGAGGGTGGCGCCGCGGCGGAAGCAGAGCCGGCAGAAGGAGCTGGTGCGGGTGCTGGGTCTGTCGGCGAGGGACGAGGCGCAGCTGCGGGAGACGGTGAGGCGCACGCGCATGTTGATGGAGTTGTGTGTGGTTGGGTTGCACGGTCAGATACAGGCTGGCATTGATTATCTTCCTGGAAGTATGAGCTCGAGTGGGGAGCCTATAGCCACCAGTGTCATTGTTTCTGGGGGTTATGAGGATGATTTGGATGATGGTGATGTTATAGTCTACACTGGCCATGGAGGGCAGGAGAAGAATTCGTCTAAGCAGATTGCTGATCAGAAGTTGGAGTCAGGGAACCTTGCATTGGAGAGGAGTATGCATTATGGTGTTGAGGTGAGGGTTATTCGTGGGATGAGGTATGAGGGGAGTGCTTCTGGTTCTGGTAAGGTGTATGTGTATGATGGAGTGTATAAGATTGTTGATTACTGGTTTGATGTGGGGAGGTCTGGTTTTGGTGTTTACAAGTTTAGACTTTTGAGGGTTGAGGGCCAGGCTAAGATGGGAAGTGCTATTTTGAAGGAAGTTAGGAATATCAGGAGGAGTGAGTCGGATTTGAATTCTGTGCATTGTCTTTCTGCTGATATGTCCAACAAGAAGGAGAATGTCGCTGTTCGGCTTTTCAACGACATAGATGATGATCGGGATCCTCTTAGCTATGAGTATCTTGCCAGGACTAGTTTTCCACAGTTCGTGTTTCATCAGAGTGGGCAAGCTACTGGTTGTGACTGTGTGGATAGTTGCGGTAGTGGATGCTTTTGTGCTAAGAAAAATGGGGGTGATTTTCCTTACACTCTGCAGGGGCATCTTGTGAAAGGGAAGCCTTTGATTTTTGAATGTGGCCCCTTTTGTTCTTGTCCTCCTCATTGTCGCAACCGTGTTTCGCAGAAGGGGCTGAAATATAGGTTGGAAGTGTTTAGGTCTCTGCAGACAGCTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCCGGTACTTTTATCTGCGAGTTTGCTGGGGTTGTTTTGACTAGGGAGCAGGCGCAACTCTTTGCAATGAATGGTGACATGTCAATATATCCTAATCGGTTCTCAGAAAGATGGGCGGAATGGGGGGATTTGTCTCAAGTAGACGCAAAATATGTGCGTCCATCATATCCATCTATTCCTCCTTTAGATTTTTCTCTGGATGTGTCAACAATGAGGAATGTTGCTTGCTATATGAGCCACAGTTCAACTCCAAATGTTTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTAATGTTCCCACACCTTATGCTATTTGCAATGGAGAATATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGTGTAGCTGATGAGTGGACAGGCAAGCTCTCTATATGTAACTGA 2010 0.4915 MRGLKGRGRVIFLVTVLISVLASEVLILEAEGAGECGKTPIGSAAASLSPCLSAVSNVKAKVPLACCARVGALLSTAPRCLCAVLLSPLAKQAKINLATAITIPKRCNIKNRPAGKKCGNELDLLTEFNRVTELFHLAFGGTNVVIPPNSFGLQLGAPACSDPLPSATDVNSVVLQDPKCSSSASDDSRAIVPVADGTVRVAPRRKQSRQKELVRVLGLSARDEAQLRETVRRTRMLMELCVVGLHGQIQAGIDYLPGSMSSSGEPIATSVIVSGGYEDDLDDGDVIVYTGHGGQEKNSSKQIADQKLESGNLALERSMHYGVEVRVIRGMRYEGSASGSGKVYVYDGVYKIVDYWFDVGRSGFGVYKFRLLRVEGQAKMGSAILKEVRNIRRSESDLNSVHCLSADMSNKKENVAVRLFNDIDDDRDPLSYEYLARTSFPQFVFHQSGQATGCDCVDSCGSGCFCAKKNGGDFPYTLQGHLVKGKPLIFECGPFCSCPPHCRNRVSQKGLKYRLEVFRSLQTAWGVRSLDLIQAGTFICEFAGVVLTREQAQLFAMNGDMSIYPNRFSERWAEWGDLSQVDAKYVRPSYPSIPPLDFSLDVSTMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02065 669 SMART G9a_1 209 377 IPR003105 -
Lapu3g02065 669 ProSiteProfiles SET domain profile. 513 656 IPR001214 GO:0005515
Lapu3g02065 669 Pfam Pre-SET motif 408 505 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu3g02065 669 CDD AAI_LTSS 48 109 - -
Lapu3g02065 669 Gene3D - 230 381 IPR036987 -
Lapu3g02065 669 ProSiteProfiles Pre-SET domain profile. 452 510 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu3g02065 669 Gene3D SET domain 382 669 IPR046341 -
Lapu3g02065 669 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 202 657 - -
Lapu3g02065 669 SUPERFAMILY PUA domain-like 237 385 IPR015947 -
Lapu3g02065 669 Pfam SET domain 525 656 IPR001214 GO:0005515
Lapu3g02065 669 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 44 113 IPR036312 -
Lapu3g02065 669 SMART preset_2 405 497 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu3g02065 669 Gene3D - 42 114 IPR036312 -
Lapu3g02065 669 SMART set_7 513 662 IPR001214 GO:0005515
Lapu3g02065 669 Pfam SAD/SRA domain 237 377 IPR003105 -
Lapu3g02065 669 ProSiteProfiles YDG domain profile. 223 373 IPR003105 -
Lapu3g02065 669 SUPERFAMILY SET domain 414 667 IPR046341 -
Lapu3g02065 669 Pfam Probable lipid transfer 29 118 IPR016140 -
Lapu3g02065 669 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 120 669 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02065 Lapu-Chr3 40017311 40022498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02065 238 658 Su(var)3-9 homologs AT5G04940 40.000 2.43e-95 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu3g02065 SAD_SRA 3.9e-41 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02065 K11420 - gmx:100785015 786.949