Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02059 ATGGACAATGAATCTAGTTCTTCATTCCATGTTGGTACTACTGCATCTTCACTTCCCCAAAAAGGGAGGAGAGACGGCGATGATGATCTAGAGAAGCAAGGAAGTCCAAAAAGGCAGAAGATAGATGAGGTTGCTGAGGAGCTCAAGAATGAGTTTGAGGAGAATATCAATATTGACGAGGATGGTAACTCCGAGGAAAGATATGAAGAAGCACAAGAGCAAAAGATGGAAGTTTTGCCTGTGAAAAATTCAGAGAACAATGAGGAAGAAATTGAGGAAAACTCCTCAAAAACTCTTCAATCTGAAACGCTAGCTACTCTCAAAGAACGAAGTGTTGGATCAAAGACAATATATACTAAAAATTTATCATATAGTGTGGAACGAGCTGATCTGGAAGATCTTTTCAAAGATTGTGGAGAAATTGTTGATATTCGTTTACATACTGATTATGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCAACAGAAGAAGCAGTGCTAAAAGCGCTTAAGTTAAATAATACAGAATTGTTGAGATGCCGCATGAGAATTGGTGTAGCTCAAGAGAGGCGGAAATATACCCCCAATAGAAGTTTCCATGTTAATTATTTTAGCAACAAATGTCAATCGAGTGAAAGATTTCAGCCAGTGAAATGTTCAGAGATTTCAGACGACTCTGAACAAGAAAAGGAGGGAAAAGACTCCAAAGCTGTTCAGAAAATTCCGAAAGTGCTAGCTACTTGGAAGGAACAAAATGCTACATCAAAGACAATATGTGCTAGAAATTTGTCTTACAGTGTGGAGAGGGATGATCTGGAAATTTTTTTCAGAGTGTGTGGAGAAATTGTTGATATTCGTCTTCAAAGAAATCACGAAGGAAGGTCTAGAGGCTTTGCACATGTTCAGTTTTCAACTGTAGAAGCTGCACAAAAAGCTCTTGAGTTGGATAATACAAAATGGTTTGGACGATGCATTAGTGTGGGTATAGCTCAAGAAAAAGGTGAATATGCTTCCTGTAGAAGTCTTAGCAACTGGAGCAATTCATTCTACAAGTGCGAAAGAATCCAGTCCATCAAAAAAACAGAGAGTTCAGAGTACTGTGAGGAAGATATTGAGGGAAAAGCCTTAAAAGATCCTTGGAAAAGTTCTAAATTGTTAGCTACTCTGAAAGAAGAAAATGCTTCATCAAAGACAATATATGTCAAAAACTTGTCATACAAAGTGGAACAGGCTGATGTGGAAAATTTTTTCAAAGAGTGTGGAGAAATAGTTGGTGTTCGGCTACATAGAGATCATGAGGGGAGGTTAAAAGGCTTTGGACATGTTGAGTTTGCAACAGAAGAAGCAGCACTAAAAGCTCTTGAGTTGGATAACACAGAGTTGTTGAGACGTTCCATTGTTGTTCAAATAGCTCGAGGAAAGGTTGAACATACCTGGAATAGAAGCAACTCGTTCCAAAAGCATGAAAGATATCAGCCCATGAAAGCTACAGAGCATTCAGAGGACTGTGATGAAGAAATTGAGAAAGAAGCCCGTGAAAGTTCTTATGAAAGTCCTAAAATGCTACCTACTCTGAAAGAACAAAATGCTGCATCAACGACCATATATATTGGAAACTTGTCATATGGAGTGGAACCAGCTGATGTGGAAAATCTTTTCAAAGAATGTGGAGGAATTGTTTATGTTCATCTACATACAGATCATGATGGGAGGCCTAAAGGCTTTGGACATGTTGAGTTTTCAACTGCTGAAGCAGCACAAAAGGCTCTTGAGTTGGATTATACAGAATTGTTCGGACGTCCCATCAGAGTTGAATTTGCTCGAGAAAAAGGTTATAGCTACTGTAGAAGCAACTGGAGCAACTCATTCCAGAAGGGTGAAAGAATTCAATCTCTAAGTGTATATGTGAAGGGTTTTGATAGTTCCCTCGAGGAAGAAGAGATAAAAGCTAGCCTGGAAGAGCATTTTGGTTTTTGTGGAGAGATTACGAGGATATCAATTCCGAAATTTTATGATTCTGGTGCATCTAAGGGGTTTGCTCTCCTAGACTTCAAGGATGTTGACAGTGTGAGGAGAGCTCTAGATCTTGATCAAACTGAGCTTGGAGGTTATACCTTGGTAGTTGAAAAAGCAAGGCCTCGACGTGATAACCAGGGTATAGATGGCAATAGA 2178 0.3921 MDNESSSSFHVGTTASSLPQKGRRDGDDDLEKQGSPKRQKIDEVAEELKNEFEENINIDEDGNSEERYEEAQEQKMEVLPVKNSENNEEEIEENSSKTLQSETLATLKERSVGSKTIYTKNLSYSVERADLEDLFKDCGEIVDIRLHTDYEGRFRGFGHVEFATEEAVLKALKLNNTELLRCRMRIGVAQERRKYTPNRSFHVNYFSNKCQSSERFQPVKCSEISDDSEQEKEGKDSKAVQKIPKVLATWKEQNATSKTICARNLSYSVERDDLEIFFRVCGEIVDIRLQRNHEGRSRGFAHVQFSTVEAAQKALELDNTKWFGRCISVGIAQEKGEYASCRSLSNWSNSFYKCERIQSIKKTESSEYCEEDIEGKALKDPWKSSKLLATLKEENASSKTIYVKNLSYKVEQADVENFFKECGEIVGVRLHRDHEGRLKGFGHVEFATEEAALKALELDNTELLRRSIVVQIARGKVEHTWNRSNSFQKHERYQPMKATEHSEDCDEEIEKEARESSYESPKMLPTLKEQNAASTTIYIGNLSYGVEPADVENLFKECGGIVYVHLHTDHDGRPKGFGHVEFSTAEAAQKALELDYTELFGRPIRVEFAREKGYSYCRSNWSNSFQKGERIQSLSVYVKGFDSSLEEEEIKASLEEHFGFCGEITRISIPKFYDSGASKGFALLDFKDVDSVRRALDLDQTELGGYTLVVEKARPRRDNQGIDGNR 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02059 726 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 42 220 - -
Lapu3g02059 726 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 535 611 IPR000504 GO:0003723
Lapu3g02059 726 MobiDBLite consensus disorder prediction 1 20 - -
Lapu3g02059 726 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 191 IPR000504 GO:0003723
Lapu3g02059 726 SUPERFAMILY RNA-binding domain, RBD 250 340 IPR035979 GO:0003676
Lapu3g02059 726 SUPERFAMILY RNA-binding domain, RBD 108 205 IPR035979 GO:0003676
Lapu3g02059 726 SUPERFAMILY RNA-binding domain, RBD 621 721 IPR035979 GO:0003676
Lapu3g02059 726 Gene3D - 617 726 IPR012677 -
Lapu3g02059 726 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 399 475 IPR000504 GO:0003723
Lapu3g02059 726 Gene3D - 353 481 IPR012677 -
Lapu3g02059 726 Gene3D - 20 200 IPR012677 -
Lapu3g02059 726 Gene3D - 482 616 IPR012677 -
Lapu3g02059 726 Gene3D - 207 341 IPR012677 -
Lapu3g02059 726 MobiDBLite consensus disorder prediction 21 56 - -
Lapu3g02059 726 SUPERFAMILY RNA-binding domain, RBD 529 627 IPR035979 GO:0003676
Lapu3g02059 726 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 334 IPR000504 GO:0003723
Lapu3g02059 726 MobiDBLite consensus disorder prediction 1 75 - -
Lapu3g02059 726 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 634 715 IPR000504 GO:0003723
Lapu3g02059 726 MobiDBLite consensus disorder prediction 80 96 - -
Lapu3g02059 726 SUPERFAMILY RNA-binding domain, RBD 393 488 IPR035979 GO:0003676
Lapu3g02059 726 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 184 IPR000504 GO:0003723
Lapu3g02059 726 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 327 IPR000504 GO:0003723
Lapu3g02059 726 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 636 708 IPR000504 GO:0003723
Lapu3g02059 726 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 401 468 IPR000504 GO:0003723
Lapu3g02059 726 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 537 605 IPR000504 GO:0003723
Lapu3g02059 726 SMART rrm1_1 400 471 IPR000504 GO:0003723
Lapu3g02059 726 SMART rrm1_1 116 187 IPR000504 GO:0003723
Lapu3g02059 726 SMART rrm1_1 536 607 IPR000504 GO:0003723
Lapu3g02059 726 SMART rrm1_1 259 330 IPR000504 GO:0003723
Lapu3g02059 726 SMART rrm1_1 635 711 IPR000504 GO:0003723
Lapu3g02059 726 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02059 Lapu-Chr3 39863825 39890159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02059 260 612 Eukaryotic Initiation Factors Gene Family AT2G36660 24.225 5.85e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02059 - - pvu:PHAVU_003G282900g 1129.78