Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02058 ATGGAGCTATTCCCAGCACAGCCAGATTTGTCCTTGCAAATCACCCCTCCAAACACCAAACCCACATCAAGTAATTGGAAGAAAAGCACAGAAGAGGAGATGGATTTGGGGTTCTGGAAGAGAGCTTTAAACTCCAAAACAAACTCATCCTTAGTCAGAACAGACCTCTCCCTCTCCAATCCAAGGACTTCTTCTTCAAACACCAACACCCCCAATCCCAACCCCAACCCCAACCCCAACCCTATCCTTATCCACCACTTCCAAAACAACAGCAATAACAGTAATGTCAACCCCATCCATCAAAACCATTTCTTTCACCACCAAATCCTTAGCCAAGACCTAGGTTTTCTGAGACCCATAAGAGGAATCCCCGTGTACCAAAACCCTTCTTTCTCGTTTCCTCATCCACAGTCCCTACTACATGCTCCCTCCAACAGACCCACACCTTCAAGCCCTTTCCTTTCCCAAGCTCTCATCAAGTCAAGGCTTCTCTCACGCTTTCCTCCCAAGCGTAACATGAGGGCTCCTCGGATGCGTTGGACCACTACACTCCATGCTCGCTTCGTCCATGTCGTTGAACTTTTGGGTGGCCATGAAAGGGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTAAAGGATCTCACTTTAGCACATGTTAAATCTCACTTGCAGATGTACCGGACTGTGAAAACTACAGATAGAGCTGCGGCACCATCTGGGCAATATGATACTTATGATAATGGCTCTTCTGGAGATACTTCTGAAGACTTCATGTTTGATATAAACTCTCCAAGAAGGTCTGATATATCTATTAAGCAAGCAAGAACAAGTGCTAATCAAGATAATGAAAATGGTGGCCTTTGGAACAACTCTTCCAGGGAAGCTTGGTTGCATGGCAAGCCAAAGGTTGATTCTATTGGGAACGTGCCTTCTGTGGAGGGAATGGATCCAAAGGGCCTAAGCAATGAAATATCAGATGGAAACTCGTCCTCAAACATTCGAGGATCAAGTGGCAAGAAGCCAAATTTGGATTTGGAGTTCACTTTAGGTCGATCACTTTGA 1065 0.4545 MELFPAQPDLSLQITPPNTKPTSSNWKKSTEEEMDLGFWKRALNSKTNSSLVRTDLSLSNPRTSSSNTNTPNPNPNPNPNPILIHHFQNNSNNSNVNPIHQNHFFHHQILSQDLGFLRPIRGIPVYQNPSFSFPHPQSLLHAPSNRPTPSSPFLSQALIKSRLLSRFPPKRNMRAPRMRWTTTLHARFVHVVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAAPSGQYDTYDNGSSGDTSEDFMFDINSPRRSDISIKQARTSANQDNENGGLWNNSSREAWLHGKPKVDSIGNVPSVEGMDPKGLSNEISDGNSSSNIRGSSGKKPNLDLEFTLGRSL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02058 354 NCBIfam myb-like DNA-binding domain, SHAQKYF class 176 229 IPR006447 GO:0003677
Lapu3g02058 354 FunFam Myb family transcription factor 174 232 - -
Lapu3g02058 354 Pfam Myb-like DNA-binding domain 177 228 IPR001005 -
Lapu3g02058 354 MobiDBLite consensus disorder prediction 323 339 - -
Lapu3g02058 354 Gene3D - 175 232 - -
Lapu3g02058 354 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 353 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lapu3g02058 354 MobiDBLite consensus disorder prediction 1 29 - -
Lapu3g02058 354 MobiDBLite consensus disorder prediction 50 71 - -
Lapu3g02058 354 MobiDBLite consensus disorder prediction 238 260 - -
Lapu3g02058 354 MobiDBLite consensus disorder prediction 11 25 - -
Lapu3g02058 354 SUPERFAMILY Homeodomain-like 173 229 IPR009057 -
Lapu3g02058 354 MobiDBLite consensus disorder prediction 301 354 - -
Lapu3g02058 354 MobiDBLite consensus disorder prediction 238 258 - -
Lapu3g02058 354 MobiDBLite consensus disorder prediction 50 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02058 Lapu-Chr3 39825398 39830826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02058 1 351 G2-like Transcription Factor Family AT4G17695 39.005 2.34e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu3g02058 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02058 - - pvu:PHAVU_003G283000g 509.605