Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02057 ATGGAAGCTAGAAATGGGTTAGAATATTTGAAACATAAAAAGCTTCAGCGAGCAAAATCTGCTACTGCCAGTGCCACTGCAACAAACATTGCTAACATGATGAACAGAAGCGGAGGAGATGCTCTTGGAGCTTCTCCATCATATAGTATGAGGTTGCACGGTGATGCAGGTAGCTTTTCCAAGCGGAAGGTGGATAAGTTCGACACAAGTGATCTGGCATGGACTGAGAAAATTCCAGAGTGTCCTGTATATTATCCCACAAAGGAGGAATTTGATGATCCCTTGCTTTATTTGCAAAGAATAGCTCCCGAAGCTTCTAAATATGGTATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCTGGGGTTGTTTTAATGAGGGAGCAAGCAGGGTTCAAGTTTACAACTAGAGTGCAGCCCCTTCGTCTTGCCGAATGGGATACCGAAGACAAAGTCGTGTTTTTCATGAGTGGGATAAATTATACATTTCGTGATTTTGAAAAGATGGCGAACAAGTCTTTTGCACAAAGATATTGCAGTGCTGGACGTCTTCCTGCCACATACTTGGAGAAAGAGTTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGTAGTGCCTTTTCATCTTTGCCCACTGATCAACTTGGGAAAAGCAAGTGGAATTTGAAGAAATTTTCGTGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATCCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTACGGCATTCCAGGTCATGCAGCATTGGAATTTGAAAAGGTGGTGAGAAAACACGTGTATACTAATGATATTTTGTCAACTGGAGGGGAAGATGGAGCTTTTGATGTTCTCCTGGGGAAAACAACTATGTTCCCACCAAATATTCTGTTGGAGCATGAAGTCCCTGTGTACAAGGCTGTTCAAAATCCTGGGGATTACGTAATTACTTTCCCCAGGGCATATCATGCTGGCTTTAGTCATGGTTTCAACTGTGGTGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCTAGTCAAAGATATGCACTTCTTCACAGAGTTCCTTTGCTGCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAACATTAACAGTTGAAGATTCAGACATTTCCCCTGAAGATTTGTTATCTCATAATTGTGTTAAGATTACTTTTGTTAATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTCTTGACGAAATCAAGGGCATGTACAAGTGTTTCTTCACATTCCCAGGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACATGCATCCAGTATGCCTTCGCCATGAATCTCTTGACTTCACGTGTGGGACCGAACGCACACTTTATCTTAGGGAAGATACTTCAGACATGGAAGCTGTGGCCAAGAGATTTGAGCAGGAAGATGAAATTTTGAAAGAGATATTAAAGCAAATTAAAAGTGAAAAAAACATCTATTCATGCCCTTTGTCAAACATGTTCCAGATGGCTGAGGCTGATGGATATACACCTTATTGTGAGATAAAATTTGATTCTGTTACTAATTTTTGTACCACCCCAAAGCTGTCAACAAATAATATAGAGCGTATACGAAGTCAATTTGTATCTAGACCTGAAGTATCTTCTGCTGCATCTACTCTATGTTCTCTTTCCAAACCTCCTGAGGATGAGGTGCATGCTAACTTTAAATTAGGCAGTCCTGATTTTGAAGAGAATTATGAAAGAATGTCTAATACTGCTTCTGAGTCTTTGCCATCGCCTGCTCAGTATGAATGTCCTAATATATCTATGGGCAATGTTCATAGATTAGAGAAGAAGCTCATTGTGGTTGACGAGAGTGATGATTCTGATTCAGGGAATTTTAGGGTTAAGCGCCCTTCTTCTCTTAAGGCAGAGAGGAGAATTGTAAGAGGTGCTACGTTTTCTACAAATTCTGCACAGCAGGGACTCAAACAATTGAAGAAAGACCTTGACGAGGGAAGGAGTGTGCAAGCAGTAGATATGAGCAAAAGAAAGGAAACGAGTTACAAATATAGGCACGGTGTTAGTCATGAGGTTAATGTTGAAATTTCCTCGAGGGAGAAATTTGCAAGGGGAAATAGCATTCCCGTAACCGTAAGATATAGGAAGACAAGTAAGGAGGAAGTTGGTAGACGACGACATCATTGCCAGACGGACACGTTGGTGCATTCCATAGAGGTTGCTCCAAAGCGCCTTAAAGCTCGAGGCCTGACATTTCGCAATCTGCATGACAAGGTGATTCTTTGGGTTCTCAGGTCAAGCTTTTTCCAGCTTTGGTGGGAGAGCCTTCTCTGCGATCTAGACCATAGAATTTTGTTTGTCATTTAA 2550 0.4141 MEARNGLEYLKHKKLQRAKSATASATATNIANMMNRSGGDALGASPSYSMRLHGDAGSFSKRKVDKFDTSDLAWTEKIPECPVYYPTKEEFDDPLLYLQRIAPEASKYGICKIISPLSASVPAGVVLMREQAGFKFTTRVQPLRLAEWDTEDKVVFFMSGINYTFRDFEKMANKSFAQRYCSAGRLPATYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLGKSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFEKVVRKHVYTNDILSTGGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHRVPLLPHEELLCKEAMLLYATLTVEDSDISPEDLLSHNCVKITFVNLMRFQHCARWLLTKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHMHPVCLRHESLDFTCGTERTLYLREDTSDMEAVAKRFEQEDEILKEILKQIKSEKNIYSCPLSNMFQMAEADGYTPYCEIKFDSVTNFCTTPKLSTNNIERIRSQFVSRPEVSSAASTLCSLSKPPEDEVHANFKLGSPDFEENYERMSNTASESLPSPAQYECPNISMGNVHRLEKKLIVVDESDDSDSGNFRVKRPSSLKAERRIVRGATFSTNSAQQGLKQLKKDLDEGRSVQAVDMSKRKETSYKYRHGVSHEVNVEISSREKFARGNSIPVTVRYRKTSKEEVGRRRHHCQTDTLVHSIEVAPKRLKARGLTFRNLHDKVILWVLRSSFFQLWWESLLCDLDHRILFVI* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02057 849 PANTHER LYSINE-SPECIFIC DEMETHYLASE 73 756 - -
Lapu3g02057 849 ProSiteProfiles JmjC domain profile. 228 398 IPR003347 -
Lapu3g02057 849 SMART JmjN_1 80 121 IPR003349 -
Lapu3g02057 849 SUPERFAMILY Clavaminate synthase-like 159 414 - -
Lapu3g02057 849 ProSiteProfiles JmjN domain profile. 81 122 IPR003349 -
Lapu3g02057 849 FunFam Lysine-specific demethylase isoform A 76 425 - -
Lapu3g02057 849 Coils Coil 529 549 - -
Lapu3g02057 849 Pfam C5HC2 zinc finger 478 527 IPR004198 -
Lapu3g02057 849 Pfam jmjN domain 82 114 IPR003349 -
Lapu3g02057 849 Pfam JmjC domain, hydroxylase 258 381 IPR003347 -
Lapu3g02057 849 Gene3D Cupin 74 403 - -
Lapu3g02057 849 SMART cupin_9 225 398 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02057 Lapu-Chr3 39797108 39811818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02057 78 546 JUMONJI Transcription Factor Family AT2G34880 31.860 8.50e-66 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu3g02057 JmjC 1.2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02057 - - vra:106765852 1396.33