Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02055 ATGGAGGGATCGGGCAGTGGTGGCGGAGAAGTGTCGACGGCGGCACCGACACCGATTCCGAACACTAACGCGCCGCCGCCTTTCCTGAGCAAGACGTACGACATGGTGGACGACCCTTCTACGGACTCGATTGTGTCGTGGAGTCCAACGAACAACAGCTTCATTGTTTGGAACCCTCCAGAGTTCGCCAGAGACCTTTTGCCCAAACACTTCAAGCACAATAACTTCTCCAGCTTCGTTCGCCAGTTAAATACCTACGGTTTTAGGAAGGTAGACCCAGATCGCTGGGAATTTGCAAACGAGGGATTTTTAAGGGGTCAAAAGCACTTGCTTAAGACCATTTCTCGGCGGAAACCTGCCCATGGTCATAATCATCAACAAACACAACAAGTACATGGACAGAGTTCATCGGTTGGGGCTTGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAATCTACTGATAACCAGCTGCAGACAATGGTTCAGCGCCTTCAGGGAATGGAGCATAAACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGGCCTGGTTTCTTAGCTCAATTTGTACAACAGCAAAATGAGAGTAATAGACGCATAACAGAGTCAAACAAAAAACGTCGACTGAAGCAGGAAGGTATTGGTGAAATGGAACATACCACCGGTTCTGATGGGCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGGCAAGGCAAATAATGAAATTGGATGCTTCTCGATTAGAACCTTTTAGTAACAACCCGGATAATTACTTGATCGGTGATCATTCATCACCATCCAGTGAAATGGACAGGGGGAACTCTTTGAATCGGTCTTCTGGAGTAACACTTCAAGAGGTTCCTCCAACTAAAGTGCAGTCTTCTCATGTTCCCTCAGCAGCAAGGAGTCAAGGGCATGGTCCTTCAACTGGAAAATCTGAGATTCTATCTTCTCCCCATGTTACAGCCTGTGAAGAAGTTACATATCCTAATATAAATGTTTCAGTTGGAGAACCTAATGCACCTACAACTGTCCCTGCTACTCAAACAGATGAAATCATGACAGACCTTTCTACAATACCAGATATAGTGGCAGGAAATATTCTTGATATTCCTCAAGAAAATTATATGGCACCAGAGACGGGTGGTGAGGGATATATGGATCCTACTTCATTTGGAGTGAATATGTCACTGCCCCTTGATTTTGATAGTATTTCACCTGAAACAGACATCGATGATTTGTTGAACAATCCTCACTTTTGGGATGATATTGTGCGAACTCCGGTGTCAGAGGATATTGAAACGAATGGTGCTGAAGTATTCAAGGAGAATGAGGTGCAGCCAACGGAAAATGGATGGGAAAAATCTCAACATGTGGACCTGCTTACTGAGCAGATGGGCCTACTTTCTTCTGATGCAAAAAAAAATTGA 1524 0.4436 MEGSGSGGGEVSTAAPTPIPNTNAPPPFLSKTYDMVDDPSTDSIVSWSPTNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTISRRKPAHGHNHQQTQQVHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEHKQQQMMSFLAKAVQRPGFLAQFVQQQNESNRRITESNKKRRLKQEGIGEMEHTTGSDGQIVKYQPLINEAAKAMARQIMKLDASRLEPFSNNPDNYLIGDHSSPSSEMDRGNSLNRSSGVTLQEVPPTKVQSSHVPSAARSQGHGPSTGKSEILSSPHVTACEEVTYPNINVSVGEPNAPTTVPATQTDEIMTDLSTIPDIVAGNILDIPQENYMAPETGGEGYMDPTSFGVNMSLPLDFDSISPETDIDDLLNNPHFWDDIVRTPVSEDIETNGAEVFKENEVQPTENGWEKSQHVDLLTEQMGLLSSDAKKN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02055 507 MobiDBLite consensus disorder prediction 225 243 - -
Lapu3g02055 507 MobiDBLite consensus disorder prediction 281 346 - -
Lapu3g02055 507 MobiDBLite consensus disorder prediction 1 27 - -
Lapu3g02055 507 FunFam Heat shock transcription factor 1 21 118 - -
Lapu3g02055 507 MobiDBLite consensus disorder prediction 219 249 - -
Lapu3g02055 507 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 299 IPR027725 -
Lapu3g02055 507 SMART hsfneu3 24 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g02055 507 Coils Coil 146 173 - -
Lapu3g02055 507 SUPERFAMILY "Winged helix" DNA-binding domain 24 117 IPR036390 -
Lapu3g02055 507 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g02055 507 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g02055 507 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g02055 507 Pfam HSF-type DNA-binding 28 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g02055 507 Gene3D - 21 118 IPR036388 -
Lapu3g02055 507 ProSitePatterns HSF-type DNA-binding domain signature. 67 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02055 Lapu-Chr3 39742811 39749071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02055 4 501 HSF AT1G32330 52.539 1.04e-165 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu3g02055 HSF_DNA-bind 7.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02055 K09419 - gmx:732544 832.787