Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02054 ATGAGCTTTCAGGACATCGAGGCTGGCCGGACCTTCGGTTCCAGGCGTGGCTTGACCAACGGCAAGCAGGACCCCACGCAGGCGGTGGCTGCCGGAATATTTCAGATCAACACCGCCGTCTCCACCTTCCAGAGACTTGTCAACACGCTCGGAACCCCCAAAGATACTCCCGACCTCCGCGAGAAGCTCCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATGCCTTTTACCTAAAAACTTTCTTACTTTTGCAGGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAAAGGGAAACTGCATACACTCCTTTTGTTCCCCAAGCAGTCCTTCCTTCGAGCTATACTGCTGGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAAGAGCGTGCCTTACTTGTGGAATCAAGGAGGCAGGAGGTTTTATTCTTAGATAATGAGATCGCCTTTAATGAGGCCATTATTGAGGAACGGGAGCAAGGCATTCAAGAAATACAGCATCAAATTGGTGAAGTGAACGAGATCTTCAAAGATCTTGCCGTGCTTGTCCATGAGCAAGGAACCATGATTGATGATATTGGCTCCAATATTGAGAACTCCCACGCAGCAACAGCACAAGCAAAATCTCAACTTTTAAAAGCTTCAAAGACCCAAAGATCAAATTCCTCTTTGACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTGATCGTGATCATAGTTCTTGCTGCTTAG 855 0.4596 MSFQDIEAGRTFGSRRGLTNGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPDLREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNAFYLKTFLLLQASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAGEVDVGSDKSPEERALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQHQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLLKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02054 284 Gene3D - 19 144 - -
Lapu3g02054 284 Pfam SNARE domain 227 279 IPR000727 -
Lapu3g02054 284 SMART tSNARE_6 186 253 IPR000727 -
Lapu3g02054 284 ProSitePatterns Syntaxin / epimorphin family signature. 197 236 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lapu3g02054 284 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 191 253 IPR000727 -
Lapu3g02054 284 FunFam Syntaxin-22 like 184 284 - -
Lapu3g02054 284 PANTHER SYNTAXIN 26 276 IPR045242 -
Lapu3g02054 284 Pfam Syntaxin-like protein 30 140 IPR006011 GO:0016020
Lapu3g02054 284 CDD SynN 23 159 IPR006011 GO:0016020
Lapu3g02054 284 SUPERFAMILY t-snare proteins 23 246 IPR010989 GO:0016020|GO:0016192
Lapu3g02054 284 CDD SNARE_Qa 194 252 - -
Lapu3g02054 284 SMART SynN_4 13 138 IPR006011 GO:0016020
Lapu3g02054 284 FunFam Syntaxin-22 like 20 144 - -
Lapu3g02054 284 Gene3D - 185 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02054 Lapu-Chr3 39724376 39728981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02054 1 272 SNARE and Associated Proteins AT5G46860 75.000 1.47e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02054 - - gmx:547656 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00850 2 7748022 7751637 Lapu3g02054 3 39724376 39728981 PCT