Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02049 ATGGTTGAGGGCAACATCACTATGTCAGATGGAGAGAAGAAGGAAAAGGGGACGCAGCAGGAGCGAAAGGTTCCTCTTCTGAAGCTCTTCTCCTTTGCTGACTTGTACGACTGCGTTTTGATGGGTGTTGGATCTGTTGGGGCGTGTGTTCATGGTGCCTCTGTGCCTGTTTTCTTTGTCTTCTTCGGAAAGATTATCAATGTCATAGGCTTGGCTTACCTTTCTCCCAAAGAAGCTTCCCACGAAGTTGCTAAGTATGCGTTGGATTTTGTGTATCTAAGCATAGTAATATTGTTTTCATCTTGGACAGAGGTGGCGTGTTGGATGCATACTGGGGAACGTCAAGCAGCAAAGATGAGAATGGCATACTTAAGGTCAATGCTGAATCAAGATATAAGTCTTTTTGATACTGAAGCTTCAACTGGAGAGGTTATTTCTTCTATTACCACTGACATCATCGTTGTTCAAGATGCACTCTCCGAGAAGGTTGGGAACTTCATGCACTACATAAGCCGTTTCATCACAGGCTTTACCATCGGTTTTGTGAGAGTGTGGCAGATAAGTTTAGTGACACTTGCCATTGTGCCCTTAATTGCCATTGCTGGTGGCCTTTATGCATACGTCACCATTGGCCTCATCGGAAAAGTTCGAAAAGCATATGTGAGGGCTGGTGAAATTGCCGAGGAGGTGATAGGCAATGTGAGAACGGTACAAGCATTTGCCGGAGAAGAAAGAGCAGTGAGATCATACAAAGCAGCTCTGATGAACACGTATAGAAATGGTCGAAAAGCAGGTTTAGCTAAGGGTCTGGGATTAGGCTCCATGCATTGTGTTCTTTTCCTTTCATGGGCTCTGCTTGTTTGGTTCAATAGCATAGTTGTTCACAAGAATATCGCCAATGGTGGCGACGCTTTCACTACAATGCTCAATGTAGTCATTTCTGGCCTGTCCCTTGGCCAGGCAGCACCAGATATTTCTGCATTTATCAGGGCAAAGGCATCAGCTTATCCCATTTTTGAGATGATAGAGAGGGACACCATGAGCAAAGTCAGCTCAGAAAATGGTCGAAAGTTAAGCAAATTGGAAGGTCACATCCAATTTAAGGATGTCTGTTTTAGTTATCCATCTCGTCCTGATGTGGTTATCTTCAACAACTTTTGTCTTGAGATTCCTCCAGGGAAAATTTTAGCTCTTGTGGGAGGAAGTGGTTCCGGAAAAAGCACAGTTATATCATTGATTGAGCGCTTCTATGAACCACTTTCTGGTCAAATACTTTTAGATGGGAACACCATCAGGGACCTTGATCTCAAGTGGCTTAGACAACAAATTGGGCTGGTTAACCAAGAGCCTGCACTTTTTGCTACAAGCATCAGAGAGAACATACTATACGGAAAAGATGATGCCACTCTTGAGGAAATAAATCAAGCTGTGATGCTCTCTGATGCTCAGTCTTTCATTAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGGATACAATTATCCGGGGGACAGAAACAAAGGATTGCGATATCTCGTGCCATAGTTAAGAATCCATCAATCCTTTTATTAGATGAAGCAACCAGTGCTCTGGATGCAGAGTCCGAGAAAAGTGTACAAGAGGCACTTGATCGTGTTATGGTTGGTAGAACAACCGTGATAGTTGCACACAGACTTTCTACCATTAGGAATGCAGATATGATCGTTGTTATTGAGGGAGGGAAGGTGGTGGAAATTGGCAATCACGAGGAACTCATTTCCAATCAAAATAATGTATACGCATCTCTTGTTCAAATCCAAGAAACAGCCTTTTCTCAAGGTCACCTTTCTGCGGACCCTTACTTGGGGGGGTCATCAAGGCGCCTAGGAGAGTCTTCATCCCGCACAACAAGCTTCCGAGGCAGTTTTCGCTCAGATAAAGAATCTACTAGCCGGGCTTTTGGTGATGGAATGGAAAGTGTTGGAAGTTCAAGGCATGTCTCAGTAAAAAGACTATATTCCATGATTGGTCCTGACTGGCCTTATGGTGTTATTGGAACTTTGGGTGCATTTATTGCTGGAGCACAAATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTATCTTATTACATGGATTGGGACACAACACGTCACGAAGTGAAAAAAATTGCTTTCCTTTTCTGTGGGGCTGCAGTTTTAACCATCACTGCCCATGCCATTGAACATCTTTCCTTTGGAATCATGGGGGAACGACTTACCCTTCGCGCAAGAGAAAAAATGTTTTCCGCTATTTTAAAGAGTGAAATTGGTTGGTTTGATGACATAAACAACACAAGTTCTATGCTTTCATCACGTTTAGAGACCGATGCAACATTTTTAAGAACTATAATTGTTGATCGTTCAACGATTCTTCTGCAAAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTCATGTTGAACTGGAGGATCACGCTTGTTGTACTGGCCACGTACCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTCTTCATGCAAGGCTTTGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTGAGTAATATCCGCACTGTGGCAGCATTTTGTGCTGAACAAAAGGTCCTTGACCTTTATGCTAATGAGCTTGTGGAGCCTTCAAAGCGTTCATTTAATCGGGGTCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCAGTGTTGATGGAAAAAGAGCTTTCTAGCTTCAAATCAATTATGAAGTCGTTTATGGTTTTAATTGTAACAGCACTAGCTATGGGGGAGACTTTGGCACTGGCACCTGACCTTTTGAAAGGAAATCAAATGGTTGCATCAATTTTCGAAGTGATGGATAGAAAGACAGGAATATTGGGTGATGTTGGAGAAGAGTTGAAGACTGTGGAAGGAACAATTGAGTTAAAAAGAATCCGTTTCAACTACCCTTCAAGGCCAGACGTGGTTATTTTCAATGATTTCAATCTTACAGTGCCTGCAGGAAAGAATATTGCCTTGGTGGGGCATAGTGGTTGCGGTAAAAGTTCAGTCATCTCCCTTATACTCAGATTTTATGATCCAACATCTGGGAAGGTGATGGTTGATGGAAAAGACATCAAGAAACTCAACTTGAAATCCTTTAGAAAACATATTGGTTTAGTGCAACAAGAACCGGCTCTTTTTGCAACATCAATATACGAAAACATTCTTTATGGAAAGGAAGGAGCTTCAGAAGCTGAAGTGATTGAAGCAGCTAAACTTGCCAATGCTCATAGCTTTGTAAGTGCTCTTCCTGAGGGCTACGCCACCAAAGTAGGTGAGAGAGGAGTTCAACTGTCTGGTGGCCAGAAACAAAGGGTAGCCATTGCTAGGGCTGTTTTGAAGAACCCTGAAATTTTGCTGCTAGATGAAGCCACCAGTGCACTGGATTTGGAGTCAGAGCGTGTGGTGCAACAAGCTCTAGACAAATTGATGCAGAACAGAACAACAGTTATAGTGGCACATAGGCTATCCACAATAAAAAATGCAGACCAAATAGCAGTTTTAGAGGATGGAAAGATAATTCAGCGAGGGATTCATGCAAGACTTGTAGAAATTACAGATGGAGCATACTACAAACTAGTCAGCCTTCAACAACAACAACATGTACAAGAACATTTTGATTGA 3744 0.4257 MVEGNITMSDGEKKEKGTQQERKVPLLKLFSFADLYDCVLMGVGSVGACVHGASVPVFFVFFGKIINVIGLAYLSPKEASHEVAKYALDFVYLSIVILFSSWTEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISSITTDIIVVQDALSEKVGNFMHYISRFITGFTIGFVRVWQISLVTLAIVPLIAIAGGLYAYVTIGLIGKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKAALMNTYRNGRKAGLAKGLGLGSMHCVLFLSWALLVWFNSIVVHKNIANGGDAFTTMLNVVISGLSLGQAAPDISAFIRAKASAYPIFEMIERDTMSKVSSENGRKLSKLEGHIQFKDVCFSYPSRPDVVIFNNFCLEIPPGKILALVGGSGSGKSTVISLIERFYEPLSGQILLDGNTIRDLDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEEINQAVMLSDAQSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIVVIEGGKVVEIGNHEELISNQNNVYASLVQIQETAFSQGHLSADPYLGGSSRRLGESSSRTTSFRGSFRSDKESTSRAFGDGMESVGSSRHVSVKRLYSMIGPDWPYGVIGTLGAFIAGAQMPLFALGISHALVSYYMDWDTTRHEVKKIAFLFCGAAVLTITAHAIEHLSFGIMGERLTLRAREKMFSAILKSEIGWFDDINNTSSMLSSRLETDATFLRTIIVDRSTILLQNVGLVVASFIIAFMLNWRITLVVLATYPLIISGHISEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEQKVLDLYANELVEPSKRSFNRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELSSFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASIFEVMDRKTGILGDVGEELKTVEGTIELKRIRFNYPSRPDVVIFNDFNLTVPAGKNIALVGHSGCGKSSVISLILRFYDPTSGKVMVDGKDIKKLNLKSFRKHIGLVQQEPALFATSIYENILYGKEGASEAEVIEAAKLANAHSFVSALPEGYATKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDLESERVVQQALDKLMQNRTTVIVAHRLSTIKNADQIAVLEDGKIIQRGIHARLVEITDGAYYKLVSLQQQQHVQEHFD* 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02049 1247 SMART AAA_5 1026 1224 IPR003593 GO:0016887
Lapu3g02049 1247 SMART AAA_5 392 586 IPR003593 GO:0016887
Lapu3g02049 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Lapu3g02049 1247 Pfam ABC transporter 1018 1166 IPR003439 GO:0005524
Lapu3g02049 1247 SUPERFAMILY ABC transporter transmembrane region 666 980 IPR036640 GO:0005524|GO:0016020
Lapu3g02049 1247 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Lapu3g02049 1247 MobiDBLite consensus disorder prediction 620 657 - -
Lapu3g02049 1247 Pfam ABC transporter 384 532 IPR003439 GO:0005524
Lapu3g02049 1247 CDD ABC_6TM_Pgp_ABCB1_D1_like 41 338 - -
Lapu3g02049 1247 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524|GO:0016887
Lapu3g02049 1247 Pfam ABC transporter transmembrane region 681 952 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g02049 1247 Pfam ABC transporter transmembrane region 46 314 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g02049 1247 Gene3D ABC transporter type 1, transmembrane domain 28 968 IPR036640 GO:0005524|GO:0016020
Lapu3g02049 1247 FunFam ABC transporter B family member 19 355 604 - -
Lapu3g02049 1247 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Lapu3g02049 1247 FunFam ABC transporter B family member 2 800 996 - -
Lapu3g02049 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1237 IPR027417 -
Lapu3g02049 1247 Gene3D - 989 1246 IPR027417 -
Lapu3g02049 1247 FunFam ABC transporter B family member 4 989 1243 - -
Lapu3g02049 1247 PANTHER ABC TRANSPORTER B FAMILY 10 607 IPR039421 -
Lapu3g02049 1247 CDD ABC_6TM_Pgp_ABCB1_D2_like 669 984 - -
Lapu3g02049 1247 CDD ABC_MTABC3_MDL1_MDL2 999 1237 - -
Lapu3g02049 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 603 IPR027417 -
Lapu3g02049 1247 SUPERFAMILY ABC transporter transmembrane region 23 335 IPR036640 GO:0005524|GO:0016020
Lapu3g02049 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g02049 1247 FunFam ABC transporter B family member 1 28 364 - -
Lapu3g02049 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Lapu3g02049 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 680 966 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g02049 1247 Gene3D - 355 604 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02049 Lapu-Chr3 39627388 39641016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02049 14 1243 Calmodulin-binding Proteins AT2G36910 50.158 0.0 1233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02049 K05658 - gmx:100809752 2223.74