Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02045 ATGGATTACGCTCGAGACGGGAACGTGGTGCAAATAATCACAGGCGGTGGTGGAGGAGGAGAGAGCTGGTCCGGCGATCAAGCTGATTGGGCAACGGAGGATGAGTACCGGTTTTGGAACAACAACAACAACAACGGAGACGCTGAATCGACGCCGTCGAACTCGAATTACGAGTCGCGGTCGGAGCCGCCGAACAAGAAGTCCCGGAATTCGCAGGATGGGAGCTCAAACCGGTCAAAGGCTATAGGGAAAATGTTCTTCAAGACGAAGCTGTGCTGCAAGTTCAGGGCAGGGACCTGCCCTTACATCACCAATTGCAATTTTGCCCACAGCATCGAGGAGCTGCGCCGCCCGCCACCAAACTGGCAGGAGATTGTGGCGGCACACGAGGAGGAGAAGGCAGTGATGGCAGAGCCAAGGGAAGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTTGCAGGGGATATGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACCGAAGAAGGGTGTCCCTATGGAGATAGTTGCACCTTCCTTCACGATGAGCAATCAAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGCCCAGGGGGTTATGCGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTAGTGGTGGGGGCGGTGGTAGTGGAAACGGTGGTGGTGGCGGTGGCAGTGGTGGTGCCAATGCTGCTGGGAATGGGGCGAATTCCAAGCCCTCTAATTGGAAAACCAGAATTTGCAATAAATGGGAGATGACAGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCATGGTGCCACAGAGTTGCACAGATATGGAGGGGGTCTTATGGAAGGAGAAAGCAGAGATGCTGCTTGTGTGGTTGGCAGTGACACAAATAAGGGAGTAGCTTCAAAAGCTTCTGCTGATAACGTGGTTGCTGCAGTTACACCTGTTGCCCATTCTGATGTGTATCATATTGGAGTCCCTTCACAAAGGCCTTCCATTGTGATTCAGAGGCCAGGGCAGAGAACTCATCAGAAGTGGAAAGGTCCCGATAAAATCAGTAGGATATACGGTGATTGGATTGATGACATTGAATAG 1128 0.5222 MDYARDGNVVQIITGGGGGGESWSGDQADWATEDEYRFWNNNNNNGDAESTPSNSNYESRSEPPNKKSRNSQDGSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMAEPREEFQIPTVGSSTFAGDMMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGGGGGGGGGGGGSGGGGGSGNGGGGGGSGGANAAGNGANSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDAACVVGSDTNKGVASKASADNVVAAVTPVAHSDVYHIGVPSQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02045 375 SUPERFAMILY CCCH zinc finger 84 117 IPR036855 GO:0046872
Lapu3g02045 375 FunFam Zinc finger, CCCH-type 155 193 - -
Lapu3g02045 375 MobiDBLite consensus disorder prediction 1 79 - -
Lapu3g02045 375 ProSiteProfiles Zinc finger C3H1-type profile. 254 282 IPR000571 GO:0046872
Lapu3g02045 375 Gene3D - 248 286 - -
Lapu3g02045 375 Gene3D - 81 117 - -
Lapu3g02045 375 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Lapu3g02045 375 SMART c3hfinal6 254 281 IPR000571 GO:0046872
Lapu3g02045 375 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Lapu3g02045 375 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Lapu3g02045 375 SUPERFAMILY CCCH zinc finger 252 285 IPR036855 GO:0046872
Lapu3g02045 375 Gene3D - 154 201 - -
Lapu3g02045 375 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
Lapu3g02045 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Lapu3g02045 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 280 IPR000571 GO:0046872
Lapu3g02045 375 MobiDBLite consensus disorder prediction 36 61 - -
Lapu3g02045 375 FunFam zinc finger CCCH domain-containing protein 15-like 248 287 - -
Lapu3g02045 375 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Lapu3g02045 375 FunFam Zinc finger CCCH domain-containing protein 82 118 - -
Lapu3g02045 375 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Lapu3g02045 375 PANTHER CCCH ZINC FINGER/TIS11-RELATED 232 286 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02045 Lapu-Chr3 39467456 39471324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02045 256 284 C3H Transcription Factor Family AT1G68200 62.069 4.09e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu3g02045 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02045 - - gmx:100788208 618.616