Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02042 ATGGCTTTAGAAACTCTTCCATCCAATGAGTTTTCCAACTTCATTGTCTATGATACTATATCTGCAACTCCATTTAGCAGCCATGACTCTTCGGAGGCTAGTTTCTTAGAAAGTTTTGTGAACTATCAGGAACATGACCCCTCATTTGATAACTGCTCCGTGAGGACCCGAAAGCGCCAAGCCAGCGACCCAGAAGCCATTGACAGGAAGCAGAATGTGGCGGTGGTGCAAGGTAGGAAGAAGAGGAGAAGGAAGCCAAGGGTTTGCAAAAACAAGGAAGAGGCTGAGACACAAAGAATCACTCACATTACAGTGGAAAGAAACCGCCGAAAGCAGATGAATGAGCATCTTGCTGTCCTTCGTTCACTCATGCCTGAGTCCTACGTTCCAAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCACCTCTTGCAAACACTGGAAGCAAGAAAGCTGCAACTTTTACAGCAAGAAGTGGCACAAACCAATGAAAATACGGCCATTTCCAAACTCATGCAACCCCCTTTTGCACAGTTTTTTTTGTATCCTCAGTACACATGGTCCCAGACTCCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTCACTTTAATCGAGACCCATGCAAATCTTCGAATTCTCACTAGGAAAAGCCCCGGGCAGCTAACAAAGTTAGTATCTGGTTTCCAAACTCTCTACCTCACCGTCCTACATCTTAATGTCACCACCATAGACTCTTTGGTATTCTATTCCATCAGTGCTAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGTATTGCATCGGCAGTTCATCATTTGCTTGGAAGAATTGAAGAAGAGGCTTTGCTTTGCTGTTGA 903 0.4529 MALETLPSNEFSNFIVYDTISATPFSSHDSSEASFLESFVNYQEHDPSFDNCSVRTRKRQASDPEAIDRKQNVAVVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVPRGDQASIVGGAIEFVKELEHLLQTLEARKLQLLQQEVAQTNENTAISKLMQPPFAQFFLYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRKSPGQLTKLVSGFQTLYLTVLHLNVTTIDSLVFYSISAKVEEGFQLGSVDGIASAVHHLLGRIEEEALLCC* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02042 300 Coils Coil 145 165 - -
Lapu3g02042 300 Gene3D - 89 170 IPR036638 GO:0046983
Lapu3g02042 300 PANTHER MAX DIMERIZATION, MAD 42 296 - -
Lapu3g02042 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Lapu3g02042 300 SMART finulus 103 154 IPR011598 GO:0046983
Lapu3g02042 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 166 IPR036638 GO:0046983
Lapu3g02042 300 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02042 Lapu-Chr3 39419191 39421605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02042 89 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 56.593 7.34e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g02042 HLH 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02042 - - pvu:PHAVU_003G284500g 551.206