Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02041 ATGGCCGCTGTCGGCAACCCCAGAACTTGGATTCCATATATGAACAGCAAAGACTGCTCACAAGGATTTTGTAGCTTGTACTGTCCACAGTGGTGTTACATAGTTTATCCTCCTCCTCCACCCTTTGAGTACCCAGATGATGATTCAAGCCCAAATTTTTCCCCTCTTGTCATTGCAATCATTGGGATCTTGGCCACTGCTTTTCTTCTGGTGAGTTACTACACTCTAATATCCAAGTACTGTGGCCCCAGAGAGTCTGCACGCAGAGACCCAAATGATGATTTACAAGGAACTCACAATCCCTCTCTCCAAGAACCATGGAACGGTTTAACCACAGGTCTTGACGAGGCTCTGATAAAGTCCATTGCAGTTTTCAAGTACAAGAAAGGGGATGGTGGTTCTGTTGGAGTGACGGATTGTTCAGTTTGTCTCAGCGAGTTTGAAGACGGTGAAAGTGTTAGACTCTTGCCAAAGTGCAGCCACGTTTTCCATGTCCCTTGCATTGACACTTGGCTCAAGTCTCACTCTAGCTGCCCCTTGTGTCGTGATGCCATATTCACTTTAAACGCTTCTGTTCCTGGGGCTCATACCCCAGAGGAAGAGGCCCCTACTTCAAGGAATGAAACTTCTTCTGAGAATGAAGGTCTTGGAAATGGCAATGAGTATGGAGTGGTGGTGATGTTGGAAGAAGAAAGCATACACCATTCTAGGGCTTATCCAAAGCCAGCAGTGCGTGCTTTTAGTGACTTAAGTAGCTTTCAGGGCAGGCACAGAGTGATTGAGATAAGAGATGAAGTGTGTGAATCCCTTGGTAGGTCGGTGTCTATGGACCATTCGTTTCAAAGTGGTTTTTCTGTTGCTGATGTGTTACAAATGCATGAAGAGGAAGAATCCCAAGTGGAAGGGTGCTCTACTACTGAAGCTGAACCATCAAAGAGATCACGCGGAGAGAGATACAAAACAAGGGTGCTGCATTGTGTGTTAAGTCCAATTGCAATGAAGAGATCATTTTCCAGTGACAGATTCTCAGTTAGCAAAAGTAGCAGAGCAAAGCAGGGAACTATACCCATCTGA 1074 0.4562 MAAVGNPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGILATAFLLVSYYTLISKYCGPRESARRDPNDDLQGTHNPSLQEPWNGLTTGLDEALIKSIAVFKYKKGDGGSVGVTDCSVCLSEFEDGESVRLLPKCSHVFHVPCIDTWLKSHSSCPLCRDAIFTLNASVPGAHTPEEEAPTSRNETSSENEGLGNGNEYGVVVMLEEESIHHSRAYPKPAVRAFSDLSSFQGRHRVIEIRDEVCESLGRSVSMDHSFQSGFSVADVLQMHEEEESQVEGCSTTEAEPSKRSRGERYKTRVLHCVLSPIAMKRSFSSDRFSVSKSSRAKQGTIPI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02041 357 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Lapu3g02041 357 MobiDBLite consensus disorder prediction 194 219 - -
Lapu3g02041 357 FunFam RING-H2 finger protein ATL43 114 189 - -
Lapu3g02041 357 MobiDBLite consensus disorder prediction 296 316 - -
Lapu3g02041 357 CDD RING-H2_EL5-like 139 182 - -
Lapu3g02041 357 SUPERFAMILY RING/U-box 139 188 - -
Lapu3g02041 357 PANTHER RING-H2 FINGER PROTEIN ATL16 41 313 IPR044600 GO:0016567|GO:0016740
Lapu3g02041 357 SMART ring_2 140 181 IPR001841 -
Lapu3g02041 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 186 IPR013083 -
Lapu3g02041 357 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02041 Lapu-Chr3 39400760 39402694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02041 1 232 C3H Transcription Factor Family AT3G03550 48.031 8.15e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02041 - - vun:114176645 628.246