Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02037 ATGGCCTCCGATGCCTTCACCGACAAGAACATTGTCTTCAGGAAACTCAAGGCCAAGTCTGAAAATAAGATGTGTTTCGATTGCAATGCCAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCATCGCAGTCTCGGCGTTCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCGTGGAGTCCTGAGCAACTAAAAACGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGCAAAATAGAGGCTAAATACACATCCAGAGCTGCAGACTTGTATAGGCAAATTCTTTCGAAGGAAGTGGCTAAAAGTATGGCTGAGGATGGAGGCTTGCCTTCATCACCTGTCGCTTCTCAGTCTTCCCAGGGTGTTAATGGGCTTCCTGAAGTCAGGACCAATGAAGTGCCTAAAGAAAACACTCTGGACAAGCCTGTAAAACCTGAGAGCACTTCTTCACCTAGGGCTTCTCACACAGTAATTTCAAGTAGTGTTAAGAAACCTATTGGTGCTAAAAAAGCTGGGAAGACTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAATCCCCTGTTCCTGTTCCATCCTCAACAAACGGTATGCCTGCTGGCCCATCTCTGACATCGCGGTTTGAGTATGTAGAAAATGTCCAGTCTTCTGAGTTGAACACTGGAGGTTCACATGTGATGAGTCATGTGTCTCCTCCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATGGTGGCTTTCCTAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAGTTCAGGAATCTGATGAGGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCATCATCTCAATTTTTTGGAGATCAGAGCAAAGGTGCAGATTTGGATTCTCAAGCTTCTTTGTCTAAGTTTTCGGGTTCAACTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCGAGAGACAACGCCATTGATCTCACTGCCAGTGACCTCATCAATCGATTATCTTTCCAGGCACAACAGGACCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCAGCTCATTGGCCTCTACATTGATGACGGATCTTCAGGACCGAATCCTCTAA 1212 0.4629 MASDAFTDKNIVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKTMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMAEDGGLPSSPVASQSSQGVNGLPEVRTNEVPKENTLDKPVKPESTSSPRASHTVISSSVKKPIGAKKAGKTGGLGARKLTKKPSESLYEQKPEESPVPVPSSTNGMPAGPSLTSRFEYVENVQSSELNTGGSHVMSHVSPPKSSSFFADFGMDGGFPKKSGPSSSKVQVQESDEARRKFSNAKSISSSQFFGDQSKGADLDSQASLSKFSGSTAISSADLFGDSRDNAIDLTASDLINRLSFQAQQDLSSLKNIAGETGKKLSSLASTLMTDLQDRIL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02037 403 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Lapu3g02037 403 Pfam Putative GTPase activating protein for Arf 12 100 IPR001164 GO:0005096
Lapu3g02037 403 MobiDBLite consensus disorder prediction 165 183 - -
Lapu3g02037 403 MobiDBLite consensus disorder prediction 282 306 - -
Lapu3g02037 403 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Lapu3g02037 403 MobiDBLite consensus disorder prediction 221 240 - -
Lapu3g02037 403 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Lapu3g02037 403 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Lapu3g02037 403 CDD ArfGap_ArfGap2_3_like 8 123 - -
Lapu3g02037 403 Gene3D Arf GTPase activating protein 1 136 IPR038508 -
Lapu3g02037 403 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Lapu3g02037 403 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Lapu3g02037 403 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Lapu3g02037 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 403 - -
Lapu3g02037 403 MobiDBLite consensus disorder prediction 133 148 - -
Lapu3g02037 403 MobiDBLite consensus disorder prediction 126 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02037 Lapu-Chr3 39179511 39186165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02037 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 1.62e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02037 K12493 K11855 gmx:100785169 707.212