Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02036 ATGACAGAGTACCGGTCGCCGCCGATGATGAATCTGTGGACCGACGACAACACTTCCGTCATGGAGGCCTTCATGAGCTCCTCTGACTTCTCCTCTCTGTGGCTGCCCACGCCGCATTCTGCTGCCTCTACTACCACTCCGGGAGCCGACACGGCCAGTGCCCCGCCGCTCCCTCCGCCGCCACAGTCCCAGTCTCTCCTCAACCAGGAGACCTTACAACAGCGCCTGCAAACTCTGATCGAAGGTGCCCGAGAGAGCTGGACCTATGCGATTTTCTGGCAGTCTTCTTATGAGTACTCCTCCGGCACTTCCCTTCTGGGTTGGGGCGACGGCTACTACAAGGGCGAGGAGGACAAAGGGAAAGGCAAAGCCCCCAAAGAGACGTCGGCGGCGGAGCAGGACCACCGGAAGAAGGTTCTCCGCGAGCTCAATTCCTTGATTTCCGGCCCTTCCGCTTCCGCTGATGATGTGGACGAAGAGGTTTCCGACACTGAGTGGTTCTTTCTAGTGTCCATGACTCAGTCCTTTGTCAACGGCAGCGGCCTCCCGGGTCAGGCTTTTTTCAATTCCAGCCCCGTTTGGGTCGCCGGAGCCGATCGGTTATCGGAATCGACGTGCGAGCGGGCCCGCCAGGGGCAGGTCTTTGGGCTTCAGACTCTGGTCTGCATACCGTCCGCAAACGGTGTCGTTGAGCTGGCCTCCACGGAGGTGATTTTCCAGAACCCTGATCTGATGAACAAAGTGCGGGATTTGTTCAACTTCAACAACCCTGACGCGGGTTCTTGGCCGTTGAATTGCGTTGCCACCGATCAGGGCGAGAACGACCCTTCCTCGCTCTGGCTCAATCCTTCTTCCTCTATGGAAATCAAGGACACCTCTAACGCCGTTCCTCTCCCTTCGGCGAACGCAACAGTAAGCAAAACGATGCCGTTCGAAACCCCTGGTTCCAGCACTCTAACGGAAACCCCCAGCGCCGCAGCTGCCGCCGCTCACGTACCCAACTCTAAGAGCCAGGGTTTCTTCCCGAAGGAATTGAACTTCTCCAACACTTTAAAACCCGAGTCCGGTGAAATTCTGAGCTTTGGAGAGAGCAAGAAGAGCTCTTACAATGGGAGTTACTTCCCCAGTGCTGCAGCTGAGGAGACCAACAAGAAGAGAAAGTCTCCTGTTTCTCGCAGCAGCATTGACGATGGAATGCTCTCCTTCACCTCCGGTGTTATTGTGCCGGCTTCGAATATAAAATCCGGTGGTGGAGATGCCGGCGGCGGTGATTCCGAAAACTCGGATCTAGAAGCTTCCGTGGTGAAAGAGGCGGACAGCAGGGTGGTGGAACCGGAGAAACGGCCCCGAAAGAGGGGGAGAAAGCCGGCGAATGGTAGAGAGGAGCCGCTGAATCACGTGGAAGCGGAGAGGCAGAGGAGGGAAAAACTGAATCAAAGGTTCTACGCGCTTCGTGCGGTGGTTCCCAACGTGTCGAAGATGGACAAGGCATCGCTCTTGGGCGATGCCATATCCTACATAAACGAGCTGAAGACAAAGCTGAGTGAGCTTGAATCGGAGAAAGGGGAGTTAGAGAAGCAATTGGATTCGGCTAAGAAGGAGCTTGAGCTGGTAACTAAAAACCGTTCTCCTCCTCCTCCTCCTCCTGCTGGACCACCGCCATCTGATAAAGAAGCGAAGGAAACGACGAGCAAGCTGATTGATTTGGAGTTAGAGGTGAAGATCATAGGCTGGGACGCCATGATAAGGATCCAATGCAGCAAGAAGAACCACCCTGCGGCCAGGTTGATGGCGGCGTTGAAGGACCTGGACCTGGACGTGAATCACGCCAGCGTGTCCGTGGTGAATGATTTGATGATCCAACAAGCCACGGTGAACATGGGAAACCGGTTTTACACGCAGGAACAGCTCCTGTCGGCGCTCTCCTCCAAAATTGGCGATGCACTATAG 1950 0.5554 MTEYRSPPMMNLWTDDNTSVMEAFMSSSDFSSLWLPTPHSAASTTTPGADTASAPPLPPPPQSQSLLNQETLQQRLQTLIEGARESWTYAIFWQSSYEYSSGTSLLGWGDGYYKGEEDKGKGKAPKETSAAEQDHRKKVLRELNSLISGPSASADDVDEEVSDTEWFFLVSMTQSFVNGSGLPGQAFFNSSPVWVAGADRLSESTCERARQGQVFGLQTLVCIPSANGVVELASTEVIFQNPDLMNKVRDLFNFNNPDAGSWPLNCVATDQGENDPSSLWLNPSSSMEIKDTSNAVPLPSANATVSKTMPFETPGSSTLTETPSAAAAAAHVPNSKSQGFFPKELNFSNTLKPESGEILSFGESKKSSYNGSYFPSAAAEETNKKRKSPVSRSSIDDGMLSFTSGVIVPASNIKSGGGDAGGGDSENSDLEASVVKEADSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKTKLSELESEKGELEKQLDSAKKELELVTKNRSPPPPPPAGPPPSDKEAKETTSKLIDLELEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLDLDVNHASVSVVNDLMIQQATVNMGNRFYTQEQLLSALSSKIGDAL* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02036 649 PANTHER MYC 22 644 IPR045084 GO:0003700|GO:0006355
Lapu3g02036 649 MobiDBLite consensus disorder prediction 38 65 - -
Lapu3g02036 649 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 461 510 IPR011598 GO:0046983
Lapu3g02036 649 MobiDBLite consensus disorder prediction 537 562 - -
Lapu3g02036 649 Coils Coil 500 541 - -
Lapu3g02036 649 MobiDBLite consensus disorder prediction 411 471 - -
Lapu3g02036 649 Gene3D - 453 541 IPR036638 GO:0046983
Lapu3g02036 649 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 464 530 IPR036638 GO:0046983
Lapu3g02036 649 CDD bHLH_AtAIB_like 458 534 - -
Lapu3g02036 649 SMART finulus 467 516 IPR011598 GO:0046983
Lapu3g02036 649 FunFam Transcription factor bHLH13 454 528 - -
Lapu3g02036 649 Pfam Helix-loop-helix DNA-binding domain 465 510 IPR011598 GO:0046983
Lapu3g02036 649 MobiDBLite consensus disorder prediction 541 555 - -
Lapu3g02036 649 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 72 252 IPR025610 -
Lapu3g02036 649 MobiDBLite consensus disorder prediction 430 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02036 Lapu-Chr3 39124735 39127557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02036 1 646 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.940 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g02036 bHLH-MYC_N 1.5e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02036 K13422 - gmx:100790854 957.977