Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02025 ATGTCTCCGCCTCTGCTGGTTGCTGAAGATGAAGGGCAGAGCAATGCCTCAATGGTAGCGTCTGCATCTTCACCATCCATGGAGTGCTTCTCCCCACACGAGGCTAGATTGAAAGAACGGAATTACCTGGGATTGTCAGATTGCTCTTCGGTGGACAGTTCCACTGTCCCGAGCTTGTCTGGTGAGAAAAAGAACCTGAATTTGAAGGCTACTGAGTTGAGGCTGGGCCTTCCTGGATCCCAGTCACCTGAAAGGGATCCAGATCTTTTCCCATTGACCTCAACAAAACTTGACGAGAAACCACTGTTCCCTTTGCTTCCTACCAAGGATGGAATCTTCACATTGTCCCAGAAAACTGTGGTCTCAGGCAACAAAAGAGGTTTTGCCGACACAATGGACACTGAGTTTCCTGGAAATGCAGGGATAAACATGATGCTATCACCTAAACCTTCTGGGATTCAGCCGACCACAGTGAAAGAAGTACCAAGCAAGGTGTTACAAGAACGTCCTTCTGCAGCAAATGGAACTGATCTTAACCATACAGGAGCTTCTATCAGTGGCAGTGCACCTGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAGGTCCAGCTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTGAGGAAGGTAGATCTAAGAAATTATACAACATACCAGGAACTGTCTTCTGACCTTGAGAAGATGTTCAGTTGTTTCACTCTAGGTCAATGTGGTTCTCATGGAGTGCCCCGAAGGGAAATGTTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCGGAATATGTACTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGGCTTAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCAAGGGCCATGGAAAAATCCAGGAGCAGGAGCTAG 1047 0.4642 MSPPLLVAEDEGQSNASMVASASSPSMECFSPHEARLKERNYLGLSDCSSVDSSTVPSLSGEKKNLNLKATELRLGLPGSQSPERDPDLFPLTSTKLDEKPLFPLLPTKDGIFTLSQKTVVSGNKRGFADTMDTEFPGNAGINMMLSPKPSGIQPTTVKEVPSKVLQERPSAANGTDLNHTGASISGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCGSHGVPRREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSRSRS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02025 348 MobiDBLite consensus disorder prediction 169 191 - -
Lapu3g02025 348 FunFam Auxin-responsive protein 223 340 - -
Lapu3g02025 348 Pfam AUX/IAA family 71 339 IPR033389 -
Lapu3g02025 348 SUPERFAMILY CAD & PB1 domains 226 329 - -
Lapu3g02025 348 MobiDBLite consensus disorder prediction 14 28 - -
Lapu3g02025 348 Gene3D - 225 341 - -
Lapu3g02025 348 MobiDBLite consensus disorder prediction 1 28 - -
Lapu3g02025 348 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
Lapu3g02025 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 335 IPR003311 GO:0005634|GO:0006355
Lapu3g02025 348 MobiDBLite consensus disorder prediction 169 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02025 Lapu-Chr3 38916101 38921005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02025 242 328 B3 DNA Binding Superfamily AT1G19220 32.184 1.77e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu3g02025 AUX_IAA 2.2e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02025 K14484 - gmx:100789251 608.216