Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02018 TCTGTAAAAGAAAGGTCAAACCCCCTATACTTGGTTGCCCTTTTGAAATCCCTGGGGGAGGAAAAATGCATAGTTTTTACAAGATCGGTGGATTCTACACATCGTCTTTGCAAATTGCTGAATTGTTTTGGAGATCTGCAAATTGATATGAAGGAGTATTCTTGTCATCAACATCAACGTGTAAGAAGCAAGACTCTGAATGAGTTTCGAAAAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTAGAAGGGGTAAAAAATGTTATTAATTATGACATGTCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGTCATAAAGTCTTATTTACGCTTTCCCTATGCGTAA 378 0.3836 SVKERSNPLYLVALLKSLGEEKCIVFTRSVDSTHRLCKLLNCFGDLQIDMKEYSCHQHQRVRSKTLNEFRKGEFQVLVSSDAMTRGMDVEGVKNVINYDMSKYIKTYVHRAGRTVIKSYLRFPYA* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02018 125 SMART helicmild6 34 115 IPR001650 -
Lapu3g02018 125 Gene3D - 1 115 IPR027417 -
Lapu3g02018 125 Pfam Helicase conserved C-terminal domain 8 114 IPR001650 -
Lapu3g02018 125 PANTHER RNA HELICASE 3 114 - -
Lapu3g02018 125 CDD SF2_C_DEAD 2 114 - -
Lapu3g02018 125 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 10 125 IPR001650 -
Lapu3g02018 125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 114 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02018 Lapu-Chr3 38780719 38783027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02018 59 114 Eukaryotic Initiation Factors Gene Family AT3G19760 44.643 7.86e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02018 K14807 - gmx:102664148 189.504