Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02016 ATGGAGCTTTCTCAGCTTGGTTTCTTAGATGAACTAGTCTCTCCAAGAAGAGAGACATGGAATGCTTTGTCCACTGGGTTCTTGGAGCTATTATCTAATGGTTGGAGTTTTGACACTTTTCTTGACAACCCATCTTTGGCCACTTCAAACTCTCTATTTGGTGCATTTTCAGCACCAATAGACCGTAGATTTGAATGCCCCTACAGCAATGATGTAGCAGCATACCCATTTGCTGATGGGTTCACAATGCCATTGCCGGAGCTTGACCCTGGGAACGATGATCCCCCTCCTCCACTTCCAACAACGATGGAGGATGAAGAGATTGACTTCCATGACAACAACAACAACTACTTTGAAGAAACCAAGAGTGTCTGCAAAGTTGAGGAACAGGGCACAGAGATTCCACTCTTCAACATAGGCATGTGTGATGATGGAGAGAGAAAACCGAAGTCCAAAAAGGTAGAGGGACAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCGAAGATCAGTAAGATGGACAGGACCTCTATTCTTGGGGATACTATAGACTACATGAAAGAGCTTTTGGAAAGGATTGGTAAGTTGCAAGAGGAAGAGGTGGAAGAGGGCACAAGTCAGATAAATCTGTTGGGCATTTCAAAGGAACAACTTAAGCCAAATGAAGCAATTGTAAGAAACTCCCCGAAGTTTGATGTTGAAAGGAGAGACCAGGACACTAGGATCAGCATTTGTTGTGCCACAAAGCCTGGATTGCTACTGTCAACCGTCAACACATTAGAAGCATTCGGCCTTGAGATTCAGCAATGTGTTATAAGCAGCTTCAATGACTTTTCAATGGAAGCATCTTGTTCTGAGGTAGGTGAACAGAGAAATTGCATTAGCCCCGATGAGATAAAACAATCCCTATTCAGAAATGCAGGGTTTGGTGGGAAATGTCTCTAG 993 0.4401 MELSQLGFLDELVSPRRETWNALSTGFLELLSNGWSFDTFLDNPSLATSNSLFGAFSAPIDRRFECPYSNDVAAYPFADGFTMPLPELDPGNDDPPPPLPTTMEDEEIDFHDNNNNYFEETKSVCKVEEQGTEIPLFNIGMCDDGERKPKSKKVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEVEEGTSQINLLGISKEQLKPNEAIVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEAFGLEIQQCVISSFNDFSMEASCSEVGEQRNCISPDEIKQSLFRNAGFGGKCL* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02016 330 Gene3D - 145 206 IPR036638 GO:0046983
Lapu3g02016 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Lapu3g02016 330 Pfam Helix-loop-helix DNA-binding domain 162 205 IPR011598 GO:0046983
Lapu3g02016 330 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 116 325 - -
Lapu3g02016 330 SMART finulus 162 211 IPR011598 GO:0046983
Lapu3g02016 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 217 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02016 Lapu-Chr3 38746436 38748462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02016 9 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 45.882 2.81e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g02016 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02016 - - gmx:100790319 483.796