Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02008 ATGCCCTTCATCTCCAGAAGAGCTCTAAGAGAGGGCAACCCCTCGGCAACGACAGCTTCTAATTCTGGGGTCATTCTGAATACAAAGAACAGTCGACAGTTGGTGGTTGACAATGGTATTGTTTCCGTCAAATTTTCAAGACCGGAGGGTTACATCCTTGGAATGTCGTATAAAGGAATTGACAATATACTTGAAGATGAAAACGAAGAACAAGATAGAGGGTACCTGGACGTGGTTTGGAATACGCCAGGAAAGTCAAGTAATTTTCAGAGAATCTTCGGGACAAATTTTTCGGTTATAGTAGCTGACGAGAATATGGTGGAGCTTTCATTTTCAAGAGCATGGACATCATCCATGAATGGCTCAAGTGTCCCCATGAACATTGACATAAGATACATTTTGCGTAGTGGTGATTCAGGATTTTATTCCTATGCAATATTTGATCGCCCTGAAGGCTGGCCTGCGGTGGAGATTGACCAGATTAGGATCGTTTTCAAACTCAAGAAAGCCAGGTTCAACTATATGGCAATGTCAGATGAAAGGCAAAGAAACATGCCAACGAAGAGAGATAGAGAAACTGGTCAAGTCCTGGCATACCCTGAAGCTGTTTTGTTAACCAGACCAGTCAACCCAGAGTTCAGAGGAGAGGTGGATGATAAATACCAGTACTCATGTGAGAACAAGGCAAACACTGTTCATGGATGGGTGAGCGTGGATCGTGATGCACCCGTGGGTTTCTGGATAATAACACCAAGTAACGAGTTCCGCAATGCTGGGCCCATCAAGCAAGACCTGACTTCACATGTTGGCCCCATTACCCTCTCGATGTTTGTGAGCACTCACTATGCTGGCAAGGAGGCAACCATGGCATTTCAAGAAGGGGAGGGTTATAAAAAGGTTTTCGGCCCTGTGTTCGCCTACGTTAACTCTGCTTCACGCGAGGATGGTGCACTATCCCTCTGGTCGGACGCTGTCAATCAGCAAGCCAAAGAAGTCAGAAGTTGGCCTTATGAATTTCCTAAATCAGTAGATTTCATTCCACCCAATCAAAGGGGAATAGTGTTGGGAAGATTACTAGTGAAAGATAGTTACTTCAGAGGAGGTAGACTTCTGTATGCTAACAATGCTTACGTTGGTCTAGCTTTGCCTGGAGATACAGGGTCATGGCAAACAGAAAGCAAGGGCTATCAGTTCTGGACTCAAGCTGATACAAAGGGCTTTTTCCTGATTAATAATATTGTGCCCGGTGACTATAATTTGTATGCATGGGTTCCTGGCTTCATTGGTGATTACAGATATAATGTTACAATCACCATCCCAAAGGGAGGAGTCATAACATTTGATTCACTTGTGTATACTCCACCAAGAGGTGGACCAACCATTTGGGAAATTGGGTTCCCAGATCGCACAGCAGCAGAGTTCTATGTACCAGACCCTTACCCTACGCTCATGAACAAATTATACAACGAACAGCGCAGTGACAAGTATAGGCAATACGGCTTGTGGGAACGTTACACTGATTTGTATCCAAATGAGGATCTTGTTTACACTGTTGGTGTTAGCAAGTATAACAAGGACTGGTTTTATGCTCACGTTACAAGAAACACAGGAAATAAGACGTACCAGCCAACGACATGGCAGATTATATTTGACCATCCAAATCAAGTAGTAAGAGGAAACTACACATTGCAACTGGCTTTGGCTTGTACCAATGATGCTGACCTGCAGGTTCGTTTCAATGACCCTGAAGCTAATCCTCCAGACTTTGCAACTGGGAAAATAGGAGGAGATAGTGCCATAGCAAGGCATGGTGTGCATGGATTGCATAGGCTATTCAGCATTAATGTACCAAGTGATCGAATTTTGAAAGGAAGCAACACCATCTATCTGAAGCAGTCAAGATCCAGGAATCCTTTTCAAGGAGTTATGTATGACTATATCCGTTTGGAACGACCTCCATTGACATTGATATGA 1974 0.4382 MPFISRRALREGNPSATTASNSGVILNTKNSRQLVVDNGIVSVKFSRPEGYILGMSYKGIDNILEDENEEQDRGYLDVVWNTPGKSSNFQRIFGTNFSVIVADENMVELSFSRAWTSSMNGSSVPMNIDIRYILRSGDSGFYSYAIFDRPEGWPAVEIDQIRIVFKLKKARFNYMAMSDERQRNMPTKRDRETGQVLAYPEAVLLTRPVNPEFRGEVDDKYQYSCENKANTVHGWVSVDRDAPVGFWIITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEATMAFQEGEGYKKVFGPVFAYVNSASREDGALSLWSDAVNQQAKEVRSWPYEFPKSVDFIPPNQRGIVLGRLLVKDSYFRGGRLLYANNAYVGLALPGDTGSWQTESKGYQFWTQADTKGFFLINNIVPGDYNLYAWVPGFIGDYRYNVTITIPKGGVITFDSLVYTPPRGGPTIWEIGFPDRTAAEFYVPDPYPTLMNKLYNEQRSDKYRQYGLWERYTDLYPNEDLVYTVGVSKYNKDWFYAHVTRNTGNKTYQPTTWQIIFDHPNQVVRGNYTLQLALACTNDADLQVRFNDPEANPPDFATGKIGGDSAIARHGVHGLHRLFSINVPSDRILKGSNTIYLKQSRSRNPFQGVMYDYIRLERPPLTLI* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02008 657 Gene3D - 347 448 - -
Lapu3g02008 657 MobiDBLite consensus disorder prediction 1 22 - -
Lapu3g02008 657 CDD RGL4_C 462 650 - -
Lapu3g02008 657 Pfam Rhamnogalacturonate lyase family 21 217 IPR010325 -
Lapu3g02008 657 SUPERFAMILY Galactose-binding domain-like 458 650 IPR008979 -
Lapu3g02008 657 SUPERFAMILY Starch-binding domain-like 347 449 IPR013784 GO:0030246
Lapu3g02008 657 Gene3D - 25 322 IPR014718 GO:0030246
Lapu3g02008 657 SUPERFAMILY Galactose mutarotase-like 27 313 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lapu3g02008 657 Pfam Polysaccharide lyase family 4, domain II 374 444 IPR029413 -
Lapu3g02008 657 Gene3D - 458 650 - -
Lapu3g02008 657 Pfam Polysaccharide lyase family 4, domain III 460 649 IPR029411 -
Lapu3g02008 657 CDD RGL4_M 350 446 IPR029413 -
Lapu3g02008 657 CDD RGL4_N 27 317 - -
Lapu3g02008 657 FunFam Rhamnogalacturonate lyase B 347 447 - -
Lapu3g02008 657 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 27 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02008 Lapu-Chr3 38549139 38553451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02008 33 652 Polysaccharide Lyase AT1G09890 55.377 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02008 K18195 - gmx:100776664 1184.09