Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02007 ATGGCTATAGCAGATGATAGGCAGCGACTCATGCCAACACCAGAAGATAGATCTACAGGGCAACGCCTTGCTTATGATGAAGCTGCACTAATCACCAATCCTAGTAACCCTGAACTTCAAGGAGAGGTTGATGACAAATATCAATACTCTTGTGAGAACAAAGACAATAAAGTTCACGGGTGGATTAACTTGGACTCCAAGACCAATCAGTCAGTGGGCTTTTGGATGATCACACCAAGTAATGAGTTTCGTAGTGGTGGCCCAATTAGACAAGGTCTCACTTCTCATGTTGGCCCTGTCACCCTTAATATACTTCATACCACTCACTACTCTGGGAAGGAAGTAACCATGACATTACACGAAGGGGAACACTTCAAGAAAGTTTATGGTCCGGTTTTTGCTTATCTCAACTCGGTTTCTAGAGTTCATGATTCAGAACAAGTCCTCTGGAGTGATGCTGTGCTCCAGTTATCAGAGGAAATCAATAGATGGCCTTATGATTTCCCAAAATCAGAGGATTTTGTCCCAACCAATAAACGGGGAAGAGTGGAAGGACGATTACTTGTTCAAGACAGACACATTCAAGGAGGAAAATTTGTGTATGGCGACAATGCTTATATTGGTTTGGCTCTTCCTGGAGATGTGGGATCATGGCAAAGACAAAGCAAGGGTTACCAATTCTGGACTCAAGCTGATAAAGAGGGCCACTTCACTATTGAAAATATTGTACCAGGGGACTACAATTTATATGCATGGATTCCTGGTATTTTCGGAGACTATAAATATAACACCACCATAACCATAATACCAGGATGTATTATCCAACTGGGTTCACTCATATACAATCCTCCGAGAAATGGACCTACCTTATGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTCCACGTTCCAAATCCTTATCCTAACCTCATAAACCGATTATACATTGGGAAACCATTACACAAGTTTAGACAATATGGATTATGGAATCGTTACAACGAGTTATATCCAAATGAGGACCTCACTTACAATGTCGACGTGAGTGATTATAGTAAAGATTGGTTTTATGCTCAGGTTCCAAGGAACATAGGAAACAACACATTTCATCCAACAGAATGGGAGATTAAATTCCATCTCCCATTTGTTGTAAGAGGCAGCTACACACTGCGACTTGCCTTGGCCTCAGCTACACGTTCTAACCTGGTGGTTAGGTTTAATGACCCTGTGGCTCGTCTTCCACACTTCTCAACGGGATCAATAGGCCAAGATAATGCTGTAGCAAGACATGGCATCCATGGATTGTATTGGCCTTACAGTGTTGAAGTACCAAGCAGTGTGTTGGTGGAAGGAAGCAACACCATGTATCTGAGGCAAGCAAAAGGCATAAGTCCTTTCCAAGGCATTATGTATGACTACATCCGTTTGGAAAGACCTGAAGCTTAG 1449 0.4258 MAIADDRQRLMPTPEDRSTGQRLAYDEAALITNPSNPELQGEVDDKYQYSCENKDNKVHGWINLDSKTNQSVGFWMITPSNEFRSGGPIRQGLTSHVGPVTLNILHTTHYSGKEVTMTLHEGEHFKKVYGPVFAYLNSVSRVHDSEQVLWSDAVLQLSEEINRWPYDFPKSEDFVPTNKRGRVEGRLLVQDRHIQGGKFVYGDNAYIGLALPGDVGSWQRQSKGYQFWTQADKEGHFTIENIVPGDYNLYAWIPGIFGDYKYNTTITIIPGCIIQLGSLIYNPPRNGPTLWEIGIPDRSAAEFHVPNPYPNLINRLYIGKPLHKFRQYGLWNRYNELYPNEDLTYNVDVSDYSKDWFYAQVPRNIGNNTFHPTEWEIKFHLPFVVRGSYTLRLALASATRSNLVVRFNDPVARLPHFSTGSIGQDNAVARHGIHGLYWPYSVEVPSSVLVEGSNTMYLRQAKGISPFQGIMYDYIRLERPEA* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02007 482 Gene3D - 287 478 - -
Lapu3g02007 482 Pfam Rhamnogalacturonate lyase family 1 43 IPR010325 -
Lapu3g02007 482 CDD RGL4_C 291 478 - -
Lapu3g02007 482 Pfam Polysaccharide lyase family 4, domain II 203 274 IPR029413 -
Lapu3g02007 482 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 481 - -
Lapu3g02007 482 Gene3D - 175 271 - -
Lapu3g02007 482 CDD RGL4_M 179 279 IPR029413 -
Lapu3g02007 482 FunFam Rhamnogalacturonate lyase B 176 276 - -
Lapu3g02007 482 Pfam Polysaccharide lyase family 4, domain III 289 477 IPR029411 -
Lapu3g02007 482 SUPERFAMILY Starch-binding domain-like 175 276 IPR013784 GO:0030246
Lapu3g02007 482 SUPERFAMILY Galactose mutarotase-like 19 147 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lapu3g02007 482 Gene3D - 12 138 IPR014718 GO:0030246
Lapu3g02007 482 SUPERFAMILY Galactose-binding domain-like 286 478 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02007 Lapu-Chr3 38541256 38544998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02007 1 480 Polysaccharide Lyase AT1G09890 57.557 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02007 K18195 - gmx:100792575 879.396