Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02005 ATGGCTGCCACACCAGGGCTAGAGCATTCTAAGAAGGCTTTTGGATGGGCAGCTAGAGATACATCTGGGGTTCTCTCCCCCTTCAACTTCACCAGAAGGGAAACAGGAGAGAAGGATGTAGTAATCAAAATTATATACTGTGGAATATGCCACACCGACCTTCATAATGCAAGGAGTGAATGGGGCCAGTCCTTTTATCCACTGGTACCAGGGCACGAGATAGCAGGTGAAGTGATAGAGGTGGGAAGCAAGGTAAAAAAGTTCAAAGTGGGAGACAGGGCGGGTGTGGGGTGCCTGGTTGGATCGTGTAGGTCATGCACAAACTGTGGTAATCATCTTGAGAATTACTGTCCGAAGTCGATCCAGACGTATGGAGCGAAGGATGTTGATGGCAGCATCACACAAGGAGGCTACTCTGACCTGGTGGTTGTAGATGAATTCTTTGTGATCAGCATTCCTGATAACCTACCTCTTGAGGCTGCTGCACCTCTCTTGTGTGCTGGGATCACAGTGTATAGCCCTCTCAAATTTTTTGAACTTAACAAGCCAGGCCTGCATATTGGTGTGGTTGGTCTTGGTGGTGTTGGCCACATGGCAGTCAAGTTTGCCAAAGCTTTTGGGGCTAAGGTCACTGTAATCAGCACATCTGCCCACAAAAAGAAGGAAGCCATTGAGCATCTTGGAGCTGACTCATTTCTGGTTAGTCGGAATCAAGATGAGATGCAGGCTGCAAAGGGCACCCTGGATGGTATAATAGACACAGTTTCTGCAGTCCATTCTCTGGTTCCTCTGATCGATTTGTTGAAGACAGCTGGAAAAATTGTCATAGTTGGTCTACCTGCTAAGCCTTTGGAGCTACCAATCTTTCCTATTCTTGATAGAAAGAGTATAGCTGGCAGTTGCATTGGAGGAATAAAGGAGACTCAAGAAATGATAAACTATGCTGCGAAATACGACATAAAGCCTGATATTGAGATCGTTCCTCTCGATTATGTGAACACGGCATTCGAGCGTCTCCTGAAATCAGACGTGAAATATAGATTTGTGATTGACATTGCCAACTCACTAAAATGA 1074 0.459 MAATPGLEHSKKAFGWAARDTSGVLSPFNFTRRETGEKDVVIKIIYCGICHTDLHNARSEWGQSFYPLVPGHEIAGEVIEVGSKVKKFKVGDRAGVGCLVGSCRSCTNCGNHLENYCPKSIQTYGAKDVDGSITQGGYSDLVVVDEFFVISIPDNLPLEAAAPLLCAGITVYSPLKFFELNKPGLHIGVVGLGGVGHMAVKFAKAFGAKVTVISTSAHKKKEAIEHLGADSFLVSRNQDEMQAAKGTLDGIIDTVSAVHSLVPLIDLLKTAGKIVIVGLPAKPLELPIFPILDRKSIAGSCIGGIKETQEMINYAAKYDIKPDIEIVPLDYVNTAFERLLKSDVKYRFVIDIANSLK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02005 357 Pfam Zinc-binding dehydrogenase 194 314 IPR013149 -
Lapu3g02005 357 PANTHER ALDEHYDE REDUCTASE 8 355 IPR047109 GO:0016616
Lapu3g02005 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Lapu3g02005 357 FunFam Cinnamyl alcohol dehydrogenase 167 322 - -
Lapu3g02005 357 Gene3D - 16 352 - -
Lapu3g02005 357 SMART PKS_ER_names_mod 23 350 IPR020843 GO:0016491
Lapu3g02005 357 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Lapu3g02005 357 FunFam Putative cinnamyl alcohol dehydrogenase 6 323 352 - -
Lapu3g02005 357 CDD CAD1 14 351 IPR047109 GO:0016616
Lapu3g02005 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Lapu3g02005 357 FunFam Uncharacterized protein 16 166 - -
Lapu3g02005 357 Gene3D - 167 322 - -
Lapu3g02005 357 SUPERFAMILY GroES-like 20 184 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02005 Lapu-Chr3 38507480 38510777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02005 10 357 Monolignol Biosynthesis Gene Families AT4G37990 67.908 4.88e-161 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02005 K23232 - qsu:112021214 525.783