Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01990 ATGGAGAAAATGGAGAAAAAAGGTAAAGAAATGAAGGAAAAGAAATGGACCCGGAAACTGGAGTTGCCGATGATAATGGGGATCCCGAAGAAAGAGGTTGCATGCGACGACGACGTATTGGTGTCGCCGAGGGATGTATTTGGGGTTTCTGTTTCCGGGACGGATTCGGACAGCACCGGGAGCAGCAACTCTGATGGGCCTGGGTCTCCCGGAATGGGCCCAAATCGGGGCCAAGGGAGAGATGGGCAGACCCAGCAATGGAGGACGATGATCGACGTGTTGAGGTTCAAGTCCGTTAGAAGATTCTCGACGATTCCTCTGCTTGCGGCGAGTTACGAGATCTCGCGCCGGAGCCTCAGGAACAAGTTGGGGCGTATTCGACCAGCCAATGACGACGATGATTTGGATGCCGCTATTGACATTGATGGCATTCCCACCAAGCCTTCTTGGAGGAACTTCAATTACGCTGACCTCGTCGCTGCAACCAACGATTTCAACCCTGAGAACATGCTCGGAAAAGGTGGTCATGCTGAAGTGTACAAAGGATGCTTACCAGATGGTCGAGTTGTAGCAGTTAAGAGGTTAATGGGGAACGAAAAGGACATTGAGGACACAGCTGGTGATTTCTTGTCGGAGCTTGGAATCATTGCTCACATTAACCACCCCAATGCAACACGCCTGATTGGGTTTGGGATCGACCAAGGTCTCTACTTTGTTCTACAATTGGCCCCACATGGCAGCCTCGCCTCAATGCTCTTTGGACCTGAATGTCTGGAGTGGAGTATAAGGTTTAAAGTAGCAGTTGGGGTAGCAAAAGGATTGCAGTATCTCCACCACGATTGCCCAAGAAGAATCATTCATAGAGACATCAAAGCCTCTAATATATTACTCAACGACAATAATGAAGCTGAGATTTCAGACTTTGGATTGGCAAAGTGGCTCCCGGATAAGTGGGCCCACCATGTTGTCTTCCCAATAGAAGGCACTTTCGGATACTTAGCTCCGGAGTACTTTATGCATGGACTTGTGGATGAGAAGACTGATGTTTTTGCATTTGGGGTTTTGTTACTCGAGCTCATAACAGGTCGTCGTGCAGTTGATTCAAATAGTAGGGAAAGTCTTGTGATCTGGGCCAAACCACTGCTGGATGCAAAGTTGATCAAAGAAATAGTAGACCCCAGATTAAAAGATAATTATGATGTCGCAGAAATGAAGTGTTGCATGGCAACGGCTTCCTTGTGTATCCATCACAAGTCCTCTATGCGGCCATACATGGATCAGGTTGTGCAGCTACTAAAAGGCGAAGAGGTGCCAATAGAACTCAATCAAAATTCATCTACTCCAAGATCACTCTTGATAGATGCATGTGACCTGGAAGATTATACTTGCTCTAATTATTTGAACGACCTCAATCGCCACAAGCAACTACTCATGGAGTGA 1440 0.4729 MEKMEKKGKEMKEKKWTRKLELPMIMGIPKKEVACDDDVLVSPRDVFGVSVSGTDSDSTGSSNSDGPGSPGMGPNRGQGRDGQTQQWRTMIDVLRFKSVRRFSTIPLLAASYEISRRSLRNKLGRIRPANDDDDLDAAIDIDGIPTKPSWRNFNYADLVAATNDFNPENMLGKGGHAEVYKGCLPDGRVVAVKRLMGNEKDIEDTAGDFLSELGIIAHINHPNATRLIGFGIDQGLYFVLQLAPHGSLASMLFGPECLEWSIRFKVAVGVAKGLQYLHHDCPRRIIHRDIKASNILLNDNNEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLDAKLIKEIVDPRLKDNYDVAEMKCCMATASLCIHHKSSMRPYMDQVVQLLKGEEVPIELNQNSSTPRSLLIDACDLEDYTCSNYLNDLNRHKQLLME* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01990 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Lapu3g01990 479 Coils Coil 463 479 - -
Lapu3g01990 479 ProSiteProfiles Protein kinase domain profile. 165 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01990 479 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 244 446 - -
Lapu3g01990 479 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 140 242 - -
Lapu3g01990 479 SMART serkin_6 165 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01990 479 MobiDBLite consensus disorder prediction 49 69 - -
Lapu3g01990 479 MobiDBLite consensus disorder prediction 48 84 - -
Lapu3g01990 479 SUPERFAMILY Protein kinase-like (PK-like) 149 444 IPR011009 -
Lapu3g01990 479 ProSitePatterns Protein kinases ATP-binding region signature. 171 193 IPR017441 GO:0005524
Lapu3g01990 479 Pfam Protein kinase domain 168 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01990 479 PANTHER OS08G0249100 PROTEIN 36 445 IPR046958 -
Lapu3g01990 479 Gene3D Phosphorylase Kinase; domain 1 141 240 - -
Lapu3g01990 479 Gene3D Transferase(Phosphotransferase) domain 1 244 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01990 Lapu-Chr3 37655262 37658006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01990 125 455 Trihelix Transcription Factor Family AT5G38560 39.826 7.99e-69 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lapu3g01990 Pkinase 5.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01990 - - gmx:100794225 754.207