Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01988 GCATACAGGGGTGTTACAAGGCATCATCAACAGGGTAGATGGCAAGCGCGAATTGGCCGAGTTGCGGGAAACAAAGATCTTTACCTGGGAACATTTGCAACTGAAGAGGAAGCAGCTGAGGCATATGATATTGCGGCCATAAAGTTCAGAGGTGCAAGCGCTGTAACCAATTTTGAGATGAGCAGATATGATGTGGAGAATATATTGAATAGCTCTCTTCCAGTCGGCGGGGTAGCAAAACGCTTGAAGCTTTCCCCAGAATCGGATAACAAAGCTCTTGTTAGTAGTACTAATGAACAAGCTCAGCGCACAAACGAGACTAGCACCATCAATTTCTCAGCCATTCAGCCCCTTGCATCTCTACCCTATGAGTCTGCAAACGCATGTTACCCCCACAACCTCATCCACCATTTTGATCCTTCCAACAGTGGAAGTAGCACAGCACAAGAGTCTACTGCAGTTATGACCAATGCAACTGCACTCACCATCCTTCCACCACCACCAGTTCCTGGGTTCTTTCTATGGCCACCTCAGTCCCTTTGA 543 0.4751 AYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGASAVTNFEMSRYDVENILNSSLPVGGVAKRLKLSPESDNKALVSSTNEQAQRTNETSTINFSAIQPLASLPYESANACYPHNLIHHFDPSNSGSSTAQESTAVMTNATALTILPPPPVPGFFLWPPQSL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01988 180 SUPERFAMILY DNA-binding domain 2 61 IPR016177 GO:0003677
Lapu3g01988 180 Pfam AP2 domain 2 51 IPR001471 GO:0003700|GO:0006355
Lapu3g01988 180 PRINTS Ethylene responsive element binding protein signature 41 61 IPR001471 GO:0003700|GO:0006355
Lapu3g01988 180 PRINTS Ethylene responsive element binding protein signature 2 13 IPR001471 GO:0003700|GO:0006355
Lapu3g01988 180 CDD AP2 2 61 IPR001471 GO:0003700|GO:0006355
Lapu3g01988 180 FunFam AP2-like ethylene-responsive transcription factor 1 61 - -
Lapu3g01988 180 Gene3D AP2/ERF domain 1 61 IPR036955 GO:0003700|GO:0006355
Lapu3g01988 180 ProSiteProfiles AP2/ERF domain profile. 1 59 IPR001471 GO:0003700|GO:0006355
Lapu3g01988 180 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 132 - -
Lapu3g01988 180 SMART rav1_2 1 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01988 Lapu-Chr3 37604258 37605641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01988 2 66 AP2-EREBP Transcription Factor Family AT3G20840 41.096 4.47e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g01988 AP2 1.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01988 K09285 - gmx:100795280 252.677