Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01973 ATGGATTTCGAGGACCATGACGAAGCTCAGCTTGGGATGCCCGGGCCCACCTATGATCACTCGCCGTTCAACCCCTGCCGGCTCAAAATGCCCACTCACACCGCCCAAGAAGACCCCCTGCCGCCGGCGGTCACTCCACCACCCACCACCACTCGAAACACCGCCAGGGGAAAATACAAAGAGTGCCTCAAGAACCACGCCGTCGGAATCGGCGGCCACGCGCTCGACGGCTGCGGAGAGTTCATGGCGGCTGGCGCGGAGGGTACCCTGGATGCCCTTAAATGCGCTGCCTGCAACTGCCACCGCAACTTCCACCGTAAGGACCCGGCGGAGAGCCCCTTCCTAATGCCCTTCCAGCAGCGCCGCCACCAGCCGCCGCCGCAGTTCGCGGCGGCCTACTACCGGGCCCCGGCTGGGTACCTGCAGGTGGCGGGACAGCAGCGTGGAGGCCTTGCCACGCTGGCACTCCCGTCCACGTCAGGTGCGGGCGGTGGGGCCCAGAGCCCGAGGGAGGATCAGGAAGATGTGTCGGACCCAAGTGGTGGTGGTAGCGGGTCCAACAAGAAGAGGTTCAGAACCAAGTTCACTATGGAACAGAAAGACAAGATGCTCGCTTTCGCTGAAAAACTGGGTTGGAGGATTCAGAAGCACGACGAGAGTGTCGTGCAGGAGTTCTGTTCCCAAACTGGCGTTCAGCGTCACGTCCTCAAGGTTTGGATGCATAACAACAAGCACACCCTTGTTACCACCACAGCCACCATTCCAAGCTGGAAGCTCAACGTTGAAGCTGGGAAATTGCGTTGCTGA 807 0.6109 MDFEDHDEAQLGMPGPTYDHSPFNPCRLKMPTHTAQEDPLPPAVTPPPTTTRNTARGKYKECLKNHAVGIGGHALDGCGEFMAAGAEGTLDALKCAACNCHRNFHRKDPAESPFLMPFQQRRHQPPPQFAAAYYRAPAGYLQVAGQQRGGLATLALPSTSGAGGGAQSPREDQEDVSDPSGGGSGSNKKRFRTKFTMEQKDKMLAFAEKLGWRIQKHDESVVQEFCSQTGVQRHVLKVWMHNNKHTLVTTTATIPSWKLNVEAGKLRC* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01973 268 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Lapu3g01973 268 SUPERFAMILY Homeodomain-like 178 246 IPR009057 -
Lapu3g01973 268 FunFam Zinc-finger homeodomain protein 2 175 249 - -
Lapu3g01973 268 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 247 - -
Lapu3g01973 268 MobiDBLite consensus disorder prediction 1 54 - -
Lapu3g01973 268 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 108 IPR006456 -
Lapu3g01973 268 NCBIfam homeobox domain, ZF-HD class 188 244 IPR006455 -
Lapu3g01973 268 Gene3D - 173 250 - -
Lapu3g01973 268 MobiDBLite consensus disorder prediction 154 193 - -
Lapu3g01973 268 Pfam ZF-HD protein dimerisation region 58 108 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01973 Lapu-Chr3 37280710 37281857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01973 55 247 ZF-HD Transcription Factor Family AT4G24660 53.266 5.43e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu3g01973 ZF-HD_dimer 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01973 - - gmx:100798992 317.39