Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01968 ATGGAAGAAGCACTGCGTCGTCTTAACGGAGTGGCTCCCACTCAAGAACCCTACGTGGTTTCAGACCCTCACCCCAAGAAGTGTGCCGCCAAGCGCACTCTTCGTGACACTGCCAACTCCGGCACTGCCATGCGGTACCGTGGAGTTCGCCGTCGCCCCTGGGGACGCTACGCAGCTGAGATACGCGATCCTCAATCTAAGGAGCGCCGTTGGCTTGGCACTTTCGACACAGCTGAGGAGGCTGCCTGTGCCTATGACTGTGCTGCCCGAGCCATGCGTGGCGTCAAGGCTCGCACCAACTTCGTGTACCCTGATGCGGCCGACCCCCATCTCTTCCATCCCTTCAACCTCTCCAAGCACTGCCATGTCAGCAGGTTTCCCCACAACACAAGCTTGGGGAGTGACTTTCCTGCAAGCTCCCACAATAACGCTTCTTGTTCTTCCCCTCTCAACATGCTTCTCTTTCGTGACTTCCTTAACTCTTCTTCTAACCAGTGTCTGGTTTCTTCTGCTTCTTCTCAGCCGATTCACAATAATAAATCTGCTATTTCTTATGTTAACTCTTCATCTTCTCTATCTTCCTCTACTGCTCCTAACTGTCTCCAAGGTTGTTGTGTTGGTAACGCTAATAACAACTACAACAATAACACTCTTAGTGTCAATCATGGAGTAGAAGTTGCTGAAGTTATTGATGATGACTCAAACTTTTTTCCACGTGAGTCTTCGGATTCTGGGCTGTTGGAAGAGATAGTTCATAAGTTCTTGCCCAAATCAAAGCCTAAAGTGGAGTCGGTTCCTGAGTCGGTTCCTCAACCGATACTTGATGATGATATGGTTGTTTCTGCTGGCAAGAGTTATGGTGATTCCAGGATGAGGGTTCCTAAGGTTGAAGGTTTTGGTGTCTGTTATGATTCTCCCATGCCTCAACTTGAGGCTCTTGGTGGTTTTAATGCCATGCAGGGTGTGACCTCTATGGAGAGAGACAACCAGTTTATGGTGAACCATTTTGCAGGGTTCTCCAACTTGGAAGACTATCTTCAGTATCCAGAGCTTTTTAATTCCTTTGCTGCAAGGATG 1077 0.4884 MEEALRRLNGVAPTQEPYVVSDPHPKKCAAKRTLRDTANSGTAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGVKARTNFVYPDAADPHLFHPFNLSKHCHVSRFPHNTSLGSDFPASSHNNASCSSPLNMLLFRDFLNSSSNQCLVSSASSQPIHNNKSAISYVNSSSSLSSSTAPNCLQGCCVGNANNNYNNNTLSVNHGVEVAEVIDDDSNFFPRESSDSGLLEEIVHKFLPKSKPKVESVPESVPQPILDDDMVVSAGKSYGDSRMRVPKVEGFGVCYDSPMPQLEALGGFNAMQGVTSMERDNQFMVNHFAGFSNLEDYLQYPELFNSFAARM 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01968 359 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Lapu3g01968 359 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Lapu3g01968 359 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Lapu3g01968 359 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Lapu3g01968 359 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Lapu3g01968 359 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 34 214 - -
Lapu3g01968 359 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Lapu3g01968 359 MobiDBLite consensus disorder prediction 1 30 - -
Lapu3g01968 359 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Lapu3g01968 359 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Lapu3g01968 359 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01968 Lapu-Chr3 37078854 37079930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01968 1 266 AP2-EREBP Transcription Factor Family AT1G24590 40.214 4.02e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g01968 AP2 6.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01968 - - aprc:113860142 417.157