Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01949 ATGGAAGACGAAATGTACGGCATGCTATCGTCGGCGGAGTACTCGGAGAAAGCGTTAATGACGCCGGAAAACATATTCCCGTCTGAGTACCACGGATTTCTAATGTCCTCCGGTAGTCGGATTCCCATGTTTGGATCCGACGAGTTGCTCTCCGCCGCCGTTGCCATCACCGCCGGCGGCGGAACCGAACCCTACCCGAACGTCCCCGAAAATCAGCGCCATCACGACACCTCTTCCCTCATCAAAGCCAAAATCGCTTCTCACCCTCACTACCCTCGCCTCCTCCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGTTTGTTAGAGGAAATCCGTCGAGAAAACGACGTTTGCAAGAGGGACGTTGTTTACACGTGCGTTGGAGCCGATCGCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCCGATCTGACGCGGCCTTTTGACGAAGCCACCACCTTCCTCAACAAGATCGAAACGCAGCTTACCGATCTCTGCACTGGTTCGTCTCTTCCAACCCGTTCCGATGATGGAGGTGTATCTTCAGAAGAAGGATTTAGTGCTGGAGATGGTGATTTTCAAGATGAGCAAGTGCATAGTGAAGATAAGGAGTTAAAGGATAAACTCTTACGAAAGTTTGGAAGTCATATTGGTTCTTTGAAATTAGAATTTTCAAAGAAGAAGAAGAGGGGTAAGTTGCCAAAAGATGCTAGACAAATACTACTTCAATGGTGGAATATTCACTACAAATGGCCTTATCCTACGGAAGGTGATAAGATTGCACTGGCTAAATCAACTGGGTTAGACCAAAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAACCATCGGAGAATACGCCGTTTTCTATGGTGGATGGTCTAACCGGTCGGTTCCTTACTGATGAATGA 963 0.4756 MEDEMYGMLSSAEYSEKALMTPENIFPSEYHGFLMSSGSRIPMFGSDELLSAAVAITAGGGTEPYPNVPENQRHHDTSSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDVCKRDVVYTCVGADRELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLTDLCTGSSLPTRSDDGGVSSEEGFSAGDGDFQDEQVHSEDKELKDKLLRKFGSHIGSLKLEFSKKKKRGKLPKDARQILLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENTPFSMVDGLTGRFLTDE* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01949 320 Pfam KNOX2 domain 132 179 IPR005541 GO:0003677|GO:0005634
Lapu3g01949 320 SUPERFAMILY Homeodomain-like 238 310 IPR009057 -
Lapu3g01949 320 ProSiteProfiles ELK domain profile. 217 237 IPR005539 GO:0003677
Lapu3g01949 320 SMART KNOX2_2 129 180 IPR005541 GO:0003677|GO:0005634
Lapu3g01949 320 Pfam ELK domain 217 238 IPR005539 GO:0003677
Lapu3g01949 320 Pfam KNOX1 domain 81 122 IPR005540 GO:0003677|GO:0005634
Lapu3g01949 320 MobiDBLite consensus disorder prediction 182 211 - -
Lapu3g01949 320 Pfam Homeobox KN domain 257 296 IPR008422 GO:0003677|GO:0006355
Lapu3g01949 320 SMART ELK_2 217 238 IPR005539 GO:0003677
Lapu3g01949 320 SMART KNOX1_2 79 123 IPR005540 GO:0003677|GO:0005634
Lapu3g01949 320 CDD homeodomain 249 301 IPR001356 GO:0003677
Lapu3g01949 320 ProSitePatterns 'Homeobox' domain signature. 275 298 IPR017970 GO:0000981|GO:0006355
Lapu3g01949 320 ProSiteProfiles 'Homeobox' domain profile. 237 300 IPR001356 GO:0003677
Lapu3g01949 320 SMART HOX_1 239 304 IPR001356 GO:0003677
Lapu3g01949 320 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 304 - -
Lapu3g01949 320 Gene3D - 236 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01949 Lapu-Chr3 36472883 36483036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01949 3 320 Homeobox Transcription Factor Family AT1G23380 64.653 8.06e-139 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lapu3g01949 KNOX2 6.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01949 - - gmx:100786454 567