Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01943 TCATTAAAGGGAGAGAGAAATTATCAGTCTCCAATCTTCACTTTCAGCTATAAATTCTTACTTGTCTACAATGAGCTACATCTTCAATATCTCTCTCCTTCTCTCTTTCTCATACACTGCAGGACAGCCATGTCAACACTGAACCATCTTTTCGATCTTTCAGAACAGATATGTTACGTTGAATGTGGATTCTGTACCACAATATTAATGGTGAGCGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTCAGATGCGGCCACTGCACAAACCTTCTCTCTGTCAATATGAAGAAAACTTCCTTTGTCCCTTTCCACCTTCTAGCTTCTCTTACTCATCTTGAGCCAAACGAAGGTAGTTCAGAAGATGGTGCAATCAAGACTTTGAAGAGCTATAATGCATCCATAATGACCTATTCTGATTGTGAGAAAGTGAACATGCCAAAAATTTCCAATATTGTGAATAAACGTACCCCCAGAGAAGAGACAGAGGACACCATCTGCTTATAA 510 0.402 SLKGERNYQSPIFTFSYKFLLVYNELHLQYLSPSLFLIHCRTAMSTLNHLFDLSEQICYVECGFCTTILMVSVPCSSLSMVVTVRCGHCTNLLSVNMKKTSFVPFHLLASLTHLEPNEGSSEDGAIKTLKSYNASIMTYSDCEKVNMPKISNIVNKRTPREETEDTICL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01943 169 PANTHER PROTEIN YABBY 6-RELATED 44 157 IPR006780 GO:0007275
Lapu3g01943 169 Pfam YABBY protein 53 140 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01943 Lapu-Chr3 36079728 36081506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01943 16 156 C2C2-YABBY Transcription Factor Family AT1G23420 45.223 3.55e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lapu3g01943 YABBY 6.2e-27 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01943 K25796 - gmx:100807136 187.578