Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01932 ATGAGTGGTTTGGGTGTTGTAGAGTGGCTTAGACCTCTTGTTGAGACCAATGTTTGGGATTATGTAGTTGTTTGGAAATATGGGGATGACCCAACTAGGTTTATTGAGTGGACAGGTTGCTGCTGTAGAGGGAGTTGCAGTGTGAACACTGGTGTGATGTCCAAAGAGGAAAAGGGTGAAGTATGCCACTTAGCTCCCATTTGCAGGGACAATTATCTTCAGCATCATGTTAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTTTGCGTTGTCTCTCTATTCTGGTGTGCATGGAGAGGTTGCCATATCACAACAATCAAGATGGCTTACCAAGGATTCAATAGGAACCCAAGTTTTGATCCCTATTGTTGGCGGTCTTATTGAGCTCTTCACTGAAAAGCTGGTTCCAATGGATATGAATATCATAGAGTTCATAACAGCACATGGCTGTGTCTCTTTAAAGCAAGAAGCCATATCTGCACAGAGCTACACCAGTCTGAGCATCATTGAACATCTGCCACTTAGGGAACTGTACTCACATTGGTGGCTACCACACATGGCAGCAACTTTAACTCCTAATGTTCATCAGCCTGCAACAAAGCAGTGTACCTCCCATCCTAGCATTGAAGGACCCCCCAGTGGGTCTAATCCTTCAACTGAAGAACCATCATTTGATTCAAAGTTTGTTGGTTTGATTCCAGATGAGTATATCAAACAATCAGTTAAGATGTCTCCCATCCCCAAAACTAAAATGTCGAAGTACAATAAAACATTAGGGAAACAGCAGAGAGGTTTGAGTTCCCATTGCAGCAGTGAGGAAGAAGGTAGATCAAAACTGGTCAAGGAGCCTCAGAAGGAAGGCTACCAAGCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAACAAGATTAAAAAAGGGCTTTTTACTCTGCGGTCCCTAGTGCCAAAGATAACCAAGATGGATAGAGCTGCAATTCTTGCAGACGCCGTCGACTATATAAAGGAATTACAAGCACAAGTGAAAGAACTCAAAGATGAGGCCAGGGTTTTGGAAGTACAGGACCGTGAGAAGAACATACCAAAATTGAGGAAGCCAACAGGCAAAGAACAAGAAGGAACCAGAAGTAACTCTCTCAATCAAAGTTCTTCTGATTGCCCTAAAACAATACAGATGGAGAAGCAAGGTAGATTCTCAAAGTTGATGGAAGCTATACATTCAGTTGGACTACAGGTGGCTAGTGCCAATATGACGACATTAGATGATAAAGTCCTGAACATTCTGACGGTTAAGGCAACCAAGAAGGATATTCACCCAACTAAACTGAAAGAGTATTTAATACAGAAGACAAGCGATGATGGACAAAGTAGGTAA 1377 0.4263 MSGLGVVEWLRPLVETNVWDYVVVWKYGDDPTRFIEWTGCCCRGSCSVNTGVMSKEEKGEVCHLAPICRDNYLQHHVRTKACEALAQLPFALSLYSGVHGEVAISQQSRWLTKDSIGTQVLIPIVGGLIELFTEKLVPMDMNIIEFITAHGCVSLKQEAISAQSYTSLSIIEHLPLRELYSHWWLPHMAATLTPNVHQPATKQCTSHPSIEGPPSGSNPSTEEPSFDSKFVGLIPDEYIKQSVKMSPIPKTKMSKYNKTLGKQQRGLSSHCSSEEEGRSKLVKEPQKEGYQAKNLVTERNRRNKIKKGLFTLRSLVPKITKMDRAAILADAVDYIKELQAQVKELKDEARVLEVQDREKNIPKLRKPTGKEQEGTRSNSLNQSSSDCPKTIQMEKQGRFSKLMEAIHSVGLQVASANMTTLDDKVLNILTVKATKKDIHPTKLKEYLIQKTSDDGQSR* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01932 458 MobiDBLite consensus disorder prediction 269 287 - -
Lapu3g01932 458 MobiDBLite consensus disorder prediction 261 289 - -
Lapu3g01932 458 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 201 449 - -
Lapu3g01932 458 SMART finulus 295 344 IPR011598 GO:0046983
Lapu3g01932 458 MobiDBLite consensus disorder prediction 198 225 - -
Lapu3g01932 458 MobiDBLite consensus disorder prediction 373 389 - -
Lapu3g01932 458 MobiDBLite consensus disorder prediction 198 226 - -
Lapu3g01932 458 Gene3D - 282 356 IPR036638 GO:0046983
Lapu3g01932 458 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 148 IPR025610 -
Lapu3g01932 458 MobiDBLite consensus disorder prediction 358 372 - -
Lapu3g01932 458 Pfam Helix-loop-helix DNA-binding domain 296 339 IPR011598 GO:0046983
Lapu3g01932 458 Coils Coil 328 355 - -
Lapu3g01932 458 MobiDBLite consensus disorder prediction 358 389 - -
Lapu3g01932 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 355 IPR036638 GO:0046983
Lapu3g01932 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 338 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01932 Lapu-Chr3 35725261 35728105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01932 6 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 29.666 3.47e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g01932 bHLH-MYC_N 2.5e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01932 - - gmx:100807261 712.605