Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01931 ATGCCAGTGTTGGATTGGGTCAAAAGGCTAAAGATTGCAGTTGGCGCTGCAAAGGGCCTGGCATATCTTCACGAGGACTGCAGCCAAAAGATAATTCACCGAGATATTAAGTCAGCAAACATACTCTTGGATGATGCTTTTGAGGCACAGGTTGCAGACTTTGGACTTGCTAGGCTGGCTGATGCTGCCAATAGTCATGTATCAACTAGGGTTATGGGGACCTTTGGGTATATGGCTCCAGAATATGCAACAAGTGGAAAATTAACGGACAGATCAGATGTTTACTCATTTGGGGTTGTCCTCCTTGAGCTTGTTACGGGAAGGAAACCCGTTGATCAAACTCGGCCAATTGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATAGAGACACGTAATTTTAGTGAACTAGTAGATCCAAGACTTGAAAGAAACTTTGTGGAGAGTGAAATGTTCAGAATGGTTGAGGCAGCTGCAGCTTGTGTTCGCCACTCAGGTCCTAAACGGCCTCGTATGGTCCAGGTGGTAAGAGCCTTGGATACTGGAGACGAAGAATCTGATCTATCTAATGGAGTGAAATATGGTCACAGCACAATTTATGATTCTGGCCAATATGATAAAGAAATAATGCTATTCAAAAGGATGGCCAATGGCACCTTTGTTGATTCTGATTTTGATATGTATAGTAGAGAATACAGTCTTTCAAGAGAGACCTCGAGAGGATCCCAACAAGAATTGATGCGGCATAATTCTAGGGGCAGCTAA 780 0.441 MPVLDWVKRLKIAVGAAKGLAYLHEDCSQKIIHRDIKSANILLDDAFEAQVADFGLARLADAANSHVSTRVMGTFGYMAPEYATSGKLTDRSDVYSFGVVLLELVTGRKPVDQTRPIGDESLVEWARPLLLRAIETRNFSELVDPRLERNFVESEMFRMVEAAAACVRHSGPKRPRMVQVVRALDTGDEESDLSNGVKYGHSTIYDSGQYDKEIMLFKRMANGTFVDSDFDMYSREYSLSRETSRGSQQELMRHNSRGS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01931 259 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 2 232 IPR047117 -
Lapu3g01931 259 SMART serkin_6 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01931 259 Pfam Protein kinase domain 12 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01931 259 Gene3D Transferase(Phosphotransferase) domain 1 1 204 - -
Lapu3g01931 259 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01931 259 ProSitePatterns Serine/Threonine protein kinases active-site signature. 31 43 IPR008271 GO:0004672|GO:0006468
Lapu3g01931 259 FunFam proline-rich receptor-like protein kinase PERK8 1 199 - -
Lapu3g01931 259 SUPERFAMILY Protein kinase-like (PK-like) 4 184 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01931 Lapu-Chr3 35720810 35724397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01931 2 256 Trihelix Transcription Factor Family AT1G70460 69.650 8.64e-128 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lapu3g01931 Pkinase 1.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01931 - - pvu:PHAVU_003G060600g 462.225