Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01930 ATGAGTACAAAACAAACCGATGTGGACGATGGTTATTCTTCTCCATCACCTAAGAAAGATAAAAACAAGCAAAATATTTCTCAAGACCAGGATTCAGCTCCATCAACAAAGTCTCCTGATTCAGATTCAGATTCTCCCGATTCAGATTCTCCCGATTCAGATTCTCCCGATTCAGATTCTCCTGATTCAGATTCTCCTGATTCAGATTCTCCAGAGAGTACTCCGTCGAAGTCAACACCGTCACCGCCAACTCCCTCGAAACCTCCATCCACATTGCCATCGCCATTGCCGCCGACATCTAAAGATTTAAGTCCATCTTTACCGTCACCGTCATCTAAAGATTTAAGTTCATCACCACCATCACCGTCATCTAAAAATTTAACTCCATCACCACCATCACCGTCATCTGATGATCCAAGTCCATCACCACCCCCATCGTCATCTAAAGATTCAAGTTCATCACAACCATCATCATCATCTCAAGATTCAGGTCCATCCCCGTCATCTAAAGATTCAAGTTCATCACCACCATCACCATCATCTGAAGATTCAAGTCCATCACCGTCATCTAAAGATTCAAGTTCATCACCACCATCACCATCATCTAAAGACCCAAGTCCATCACCGCCACTTCCACTGTCATCGCCACCACCACCCTCTCCATTTCCACATTCCTCGCAACCACCTTCGCCCCGACGTTTCGCGCAACAACCTTCGCCCCCACCTTCCCCGCCACCACCTTGGTCACCGCTACCAAGTCAACTGCCAGTTCAAGATGACAATTCTTCCCTGCCACAACGTAAAATGTCGCCATCACCATCACCGCAGTTCTATGCTTCACCTCCACCTCCCGTTGATAATTCTTCTTCGCAAACTTTGCGCGGCGCAGCCTCAACAAGGGGAGCCTCTGGGAATTCACAATCAACAGGATCACGGCCCCAGGCCAAGCATGGCGTTAATTCCCAAGCAAACTCAACGGTTTCCTCTGCCCACCCATCTTCCGAAGATAACTCAGCAAAATATGTCACCTATACAGTCGCTGGACTTTTTGCTGTTGCCTTGGTTGCAGTAGCTGTAGCTGTTGCTTTGGCGTTTAAGCGGAAGAAATCAAGAGATGATGCTAATGGTGCAACTTACATGCCACCCGTTGATATTGAAGTCAAATCAGGTGCTAATGGGCATTACTATATACAGCAGCCTTCCCTTGCAAACAACTACGGAAATGGGAATGCGAGCGTGAATCATTTTGGATCTCCTTTAGACTCAGCTCAGCCCAAAAGTAATCAGATAGTTTTCACCTATGACATGGTTATGGAAATAACAAATGCATTCTCTAGTCAAAATGTTATAGGGGAAGGAGGGTTTGGATTTGTTTACAAAGGTTGGCTGCCAGATGGAAAAGGAGTTGCAGTAAAGCAGCTTAAGGCTGGCAGTGGGCAGGGAGAAAGGGAATTCAAGGCTGAAGTGGAGATCATCAGCCGAGTACATCATCGACATTTGGTGTCATTAGTTGGTTATTGCATATCTGAACAGCAAAGAATTCTTATCTATGAGTACGTTCCTAATGGAACACTCCATGATCACTTGCATGGTAACGTGAGTTTCCCTTGA 1611 0.4593 MSTKQTDVDDGYSSPSPKKDKNKQNISQDQDSAPSTKSPDSDSDSPDSDSPDSDSPDSDSPDSDSPDSDSPESTPSKSTPSPPTPSKPPSTLPSPLPPTSKDLSPSLPSPSSKDLSSSPPSPSSKNLTPSPPSPSSDDPSPSPPPSSSKDSSSSQPSSSSQDSGPSPSSKDSSSSPPSPSSEDSSPSPSSKDSSSSPPSPSSKDPSPSPPLPLSSPPPPSPFPHSSQPPSPRRFAQQPSPPPSPPPPWSPLPSQLPVQDDNSSLPQRKMSPSPSPQFYASPPPPVDNSSSQTLRGAASTRGASGNSQSTGSRPQAKHGVNSQANSTVSSAHPSSEDNSAKYVTYTVAGLFAVALVAVAVAVALAFKRKKSRDDANGATYMPPVDIEVKSGANGHYYIQQPSLANNYGNGNASVNHFGSPLDSAQPKSNQIVFTYDMVMEITNAFSSQNVIGEGGFGFVYKGWLPDGKGVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCISEQQRILIYEYVPNGTLHDHLHGNVSFP* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01930 536 MobiDBLite consensus disorder prediction 45 66 - -
Lapu3g01930 536 MobiDBLite consensus disorder prediction 76 104 - -
Lapu3g01930 536 Pfam Protein tyrosine and serine/threonine kinase 447 532 IPR001245 GO:0004672|GO:0006468
Lapu3g01930 536 MobiDBLite consensus disorder prediction 105 123 - -
Lapu3g01930 536 Gene3D Phosphorylase Kinase; domain 1 412 519 - -
Lapu3g01930 536 MobiDBLite consensus disorder prediction 200 253 - -
Lapu3g01930 536 MobiDBLite consensus disorder prediction 27 41 - -
Lapu3g01930 536 ProSitePatterns Protein kinases ATP-binding region signature. 450 472 IPR017441 GO:0005524
Lapu3g01930 536 MobiDBLite consensus disorder prediction 124 146 - -
Lapu3g01930 536 MobiDBLite consensus disorder prediction 283 336 - -
Lapu3g01930 536 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 351 532 IPR047117 -
Lapu3g01930 536 MobiDBLite consensus disorder prediction 147 199 - -
Lapu3g01930 536 SUPERFAMILY Protein kinase-like (PK-like) 417 533 IPR011009 -
Lapu3g01930 536 FunFam Proline-rich receptor-like protein kinase PERK8 418 519 - -
Lapu3g01930 536 MobiDBLite consensus disorder prediction 254 274 - -
Lapu3g01930 536 MobiDBLite consensus disorder prediction 1 336 - -
Lapu3g01930 536 ProSiteProfiles Protein kinase domain profile. 444 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01930 Lapu-Chr3 35718462 35720717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01930 341 531 Trihelix Transcription Factor Family AT1G70460 52.133 3.22e-57 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lapu3g01930 PK_Tyr_Ser-Thr 1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01930 - - pvu:PHAVU_003G060600g 368.622