Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01927 ATGTCTCTCTGTGCTTCACTCTCCACCACAACTTCACTCCTCACTTCCCTTCCTTCTTCCCTCCCTTCCACCTCTCCACTTTCTCTCAGATTTTCCTTCACTTTCCGGGAAAACAGAATCCCAGTTAGATCTCTCAAGGGCCCCTTTTCAGCAAGGTCTGCAAGAGTGTCGGTAAAGGCTCAGGCTACTGCTCCTGCTTCTTCTGAGGGTGTGAAACTGACACCTGTGCCTTCTGAGATGAAGGCATGGGTGTATGGGGAATATGGGGATGTGGGTGTTTTGAAGCTGGACTCCAATGTTGCTGTGCCTGATGTGAAGGAGGATCAGGTCCTTGTCAGAGTTGCTGCTGCTGCTCTTAACCCTGTTGATGCCAAGAGAAGGCAGGGAAAGTTTAAGGCCACTGATTCTCCACTTCCGACTGTTCCGGGGTATGATGTTGCGGGTGTGGTGGTGAAGGTTGGTAGTGAAGTGAAGGACTTTAAAGTGGGGGATGAAGTCTATGGAGATGTAAGTGAGAAAGCATTAGAAGGGCCTAAGCAATTCGGGTCTTTGGCTGAGTACACAGCGGTTGAGGAGAAACTATTGGCACCAAAACCGAAGAATTTGGACTTTGCTCAGGCTGCTGCTCTTCCTCTAGCAATTGAGACTGCTTATGAGGGTTTGGAGAGGACTGGATTTTCTCCTGGTAAATCTATTCTTGTTCTAAATGGTTCTGGAGGAGTTGGAAGCCTAGTGATTCAGCTAGCTAAGCAAGTCTTTGGAGCTTCAAGAGTTGCTGCTACTTCAAGCACTAGAAATTTGGACCTATTGAAAAGTTTGGGAGCTGATTTGGCTATTGACTACACAAAAGAAAACTTTGAAGATTTGTCAGAAAAATTTGATGTAGTCTTTGATGCCATTGGGCAATGTGACAGGGCAGTGAAGGCTGTGAAAGAAGGTGGCAGTGTGGTGGCACTGACAGGTGCTGTAACCCCACCTGGTTTCAGATTTGTAGTTACTTCCAATGGAGCTGTTCTTAGGAAACTAAACCCTTACTTAGAAAGTGGAAAGGTGAAGCCAATTGTAGACCCCAAAGGTCCATTCCCCTTTGCCAAGCTTGCTGAAGCCTTCTCCTACCTTGAAACGAATCGAGCCACTGGAAAGGTTGTTGTACACCCCATCCCCTGA 1167 0.4722 MSLCASLSTTTSLLTSLPSSLPSTSPLSLRFSFTFRENRIPVRSLKGPFSARSARVSVKAQATAPASSEGVKLTPVPSEMKAWVYGEYGDVGVLKLDSNVAVPDVKEDQVLVRVAAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSEVKDFKVGDEVYGDVSEKALEGPKQFGSLAEYTAVEEKLLAPKPKNLDFAQAAALPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLDLLKSLGADLAIDYTKENFEDLSEKFDVVFDAIGQCDRAVKAVKEGGSVVALTGAVTPPGFRFVVTSNGAVLRKLNPYLESGKVKPIVDPKGPFPFAKLAEAFSYLETNRATGKVVVHPIP* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01927 388 SUPERFAMILY GroES-like 78 234 IPR011032 -
Lapu3g01927 388 Gene3D - 221 335 - -
Lapu3g01927 388 Gene3D - 87 384 - -
Lapu3g01927 388 Pfam Alcohol dehydrogenase GroES-like domain 108 170 IPR013154 -
Lapu3g01927 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 325 IPR036291 -
Lapu3g01927 388 CDD MDR_like_2 80 384 - -
Lapu3g01927 388 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 72 388 IPR044626 GO:0016628
Lapu3g01927 388 SMART PKS_ER_names_mod 89 384 IPR020843 GO:0016491
Lapu3g01927 388 Pfam Zinc-binding dehydrogenase 273 384 - -
Lapu3g01927 388 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 229 250 IPR002364 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01927 Lapu-Chr3 35601621 35604568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01927 135 298 Monolignol Biosynthesis Gene Families AT1G72680 28.497 1.38e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01927 K18980 - gmx:100810816 612.453