Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01902 ATGAGTTGGGTTCATTCTCAAATCTGCCATAGCACTGATGCTATCAGCAACCCCACTAGTATTTCCCCATCTTCTTGTTCTTCTGCACCAGTGCCTTACAATTCTGAGTACAAGAAACAACTAACCCCTCCTCTCTCTTCTTCGTCTGGCACTAGGATAAGCCCTGCAATTGTTTTCATCTTTGTCATTCTGGCTATTGTCTTTTTCATCTCTGGTCTCCTTCACTTGCTTGTTAGATTCCTCATAAGGCACATGTCCTCTTCGTCAATTTCCCAGTCCAATAGGTACCCTGACATATCTGAATCTGATCCTTACCAGAGGCAGTTGCAGCAGCTCTTCCATCTCCATGATTCAGGCCTAGATCAGGCATTTATAGACGCTCTCCCAGTTTTCCTCTACAAAGACATAATAGGTTTGAAGGAGCCTTTCGATTGTGCTGTGTGCCTTTGCCAGTTCTCAGAACAAGACATGCTGAGACTGCTGCCCCTTTGCAATCATGCTTTTCACATTGATTGCATAGACACATGGCTGCTCTCAAATTCAACTTGTCCTCTCTGCAGAGGGAGTCTTTATGAGCCAGGCTTTGCCTTTGAAAACCCAGTTTATGACTTTGAGGGTCTGAGGGAGGAAGATGGGGTTTCAGGCAGTGTTACTGGAGAGGCTGGTTCCTTTAATAAACAAGCAGAAAATCACATAATGAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAAATAATGGAGACGGGGTGGAAAGAGGAGGAGGAGGGGAAAGCAGTACTAGTAATTTGGATGTTAGGAGATGCTATTCAATGGGGTCCTTCCAGTACGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTATGCCCCAATAGAGGTGATGGTGGAGGTGCCAGTGGTGGCAGTATGAGGCAATTCAAAGGTAGATTGCCCCATTATGTGAATTCTTCCACTGACGGGGATGTTGAGGGCAAAAAAATCAACATGGCAAGGAAAGGTGAAAGCTTTTCTATTTCCAAGATCTGGCAATGGTCTAGGAAGGACAAGGTACCAAGTTCACCTCAAAACTATTTGGGTAGTTCTAATGTCACTGCAGCTTTGCCATGGATGAATAGAGCTCAAGGTACATGA 1143 0.4488 MSWVHSQICHSTDAISNPTSISPSSCSSAPVPYNSEYKKQLTPPLSSSSGTRISPAIVFIFVILAIVFFISGLLHLLVRFLIRHMSSSSISQSNRYPDISESDPYQRQLQQLFHLHDSGLDQAFIDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEPGFAFENPVYDFEGLREEDGVSGSVTGEAGSFNKQAENHIMSGKRVFSVRLGKFRSSNNGDGVERGGGGESSTSNLDVRRCYSMGSFQYVVADSDLQVALCPNRGDGGGASGGSMRQFKGRLPHYVNSSTDGDVEGKKINMARKGESFSISKIWQWSRKDKVPSSPQNYLGSSNVTAALPWMNRAQGT* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01902 380 CDD RING-H2_EL5-like 144 187 - -
Lapu3g01902 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 192 IPR013083 -
Lapu3g01902 380 SUPERFAMILY RING/U-box 124 193 - -
Lapu3g01902 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 48 346 - -
Lapu3g01902 380 Pfam Ring finger domain 144 187 IPR001841 -
Lapu3g01902 380 FunFam RING-H2 finger protein ATL46 107 192 - -
Lapu3g01902 380 SMART ring_2 145 186 IPR001841 -
Lapu3g01902 380 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01902 Lapu-Chr3 34538159 34540616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01902 47 353 C3H Transcription Factor Family AT2G18650 38.938 2.38e-54 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01902 - - gmx:100779678 595.119