Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01895 ATGACTGTGGATGAAGTTGGAAGTAACTCCGAGTGGAACAAAGAACAAGATAAAGCATTTGAAAACGCCTTGGCCATTCATCCTGAAGATGCTTCCGACAGATGGGAGAAGATTGCGGCTGATGTACCTGGGAAAACATTGGAAGATATTAAACACCACTATGAGCTCTTGGTTGAAGATGTTAACCAGATTGAATCTGGTTGCGTACCTTTGCCATCTTATAATTATTCTTCAGAGGGCTCAGCAAGCCATGCTAGTGATGAAGGAGCTGAAAAGAAGGGAGGCAGTTCATGGAATAGTAACAACGAATCAAACCATGGAAATAAGGCTTCAAAATCAGATCAGGAACGGCGAAAGGGTATTGCATGGACAGAGGATGAACACAGGTTATTTCTTCTTGGCTTGGAGAAGTATGGAAAAGGTGACTGGCGAAGCATATCAAGGAACTTTGTAGTGACAAGAACACCTACACAAGTTGCAAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCCATGAATAAAGATAGAAGGCGATCCAGCATACATGATATCACTAGCGTCAACAATGGAGATGTTTCAACACCTCAAGGACCAATTACTGGTCAAACAAATGGTTCTGCAGCAAACTCTGGAAAATCAACCAAACCAGCCCCGCCAACCTCAACTGTTGCCCCAAGTGTAGGAATGTATGTTGCTCCCACCATTGGACAACCTATAGGAGGACCCCTTGTATCTGCAGTTGGCACCCCAGTGAACCTTCCTACCACGACACACATGGCATATGGTCTCGGAGCCCCGGTTTCCGGGACAGTTGTTCCTGGAGCGCCAATGAACTTGGGTCCTGTGGCATACCCCATGCCACACACATCTGCACATAGATGA 885 0.4554 MTVDEVGSNSEWNKEQDKAFENALAIHPEDASDRWEKIAADVPGKTLEDIKHHYELLVEDVNQIESGCVPLPSYNYSSEGSASHASDEGAEKKGGSSWNSNNESNHGNKASKSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSTPQGPITGQTNGSAANSGKSTKPAPPTSTVAPSVGMYVAPTIGQPIGGPLVSAVGTPVNLPTTTHMAYGLGAPVSGTVVPGAPMNLGPVAYPMPHTSAHR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01895 294 MobiDBLite consensus disorder prediction 186 222 - -
Lapu3g01895 294 FunFam Transcription factor SRM1 4 71 - -
Lapu3g01895 294 CDD SANT 11 58 IPR001005 -
Lapu3g01895 294 PANTHER TRANSCRIPTION FACTOR KUA1 8 290 - -
Lapu3g01895 294 SMART sant 119 169 IPR001005 -
Lapu3g01895 294 SMART sant 8 60 IPR001005 -
Lapu3g01895 294 MobiDBLite consensus disorder prediction 76 119 - -
Lapu3g01895 294 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Lapu3g01895 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Lapu3g01895 294 CDD SANT 122 167 IPR001005 -
Lapu3g01895 294 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Lapu3g01895 294 FunFam transcription factor MYB1R1 121 172 - -
Lapu3g01895 294 Gene3D - 4 71 - -
Lapu3g01895 294 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Lapu3g01895 294 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Lapu3g01895 294 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Lapu3g01895 294 MobiDBLite consensus disorder prediction 93 108 - -
Lapu3g01895 294 Gene3D - 121 173 - -
Lapu3g01895 294 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Lapu3g01895 294 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Lapu3g01895 294 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Lapu3g01895 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01895 Lapu-Chr3 34283294 34293086 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g01895 Myb_DNA-binding 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01895 - - gmx:100820272 523.472