Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01892 ATGATTGTCACTCGTTCTGCTTTGGTGCTTCATCTCCAAAACCCACCAATTCGCTACCATTTCTTCTCCCACTTCCTCAAACCAACCTTCCCTTCTCTCTTCAGACCTGGTCCCTTCTCTCTAACCACTCCACGCCAAACACAGGCTAGACTTTTTGTAAGTGCTGTTGCATCATCTTCATCCTCACAAGGTTCCAATGGCAGAGACACTTTCTTTGCAGAAGAGAACGTTTCGTGGACTTCACTCGGTCTCTCTGATACCATTTCTAGAGCGCTCTCTGATATTGGCCTCAATAGGCCCTCTCTCGTTCAGGCTTCTTCAGTACCGTCTGTGCTGTCAGAGAAGGATGTTATTATTGCCGCGGAGACTGGGAGTGGTAAGACATACAGTTACCTAGTTCCTCTAATTGATAAGCTAAGGGATGCCAAGGAACATTCTCTACATGCTGTGTCTGATCAAGAAGTGACCTCGACGCAGAAAGTTCTGCTCATCCTTTGTCCGAATGTGCAACTTTGTGAGCAGGTAGTTAGGATGGCTAACAGTCTATGTGGGGATGATGGTGAGGCGATAGTCAGTGTGGCTGCCATTTGTGGCAGACAGGGATGGCCAATTCGGGAACCTGAAGTCATTGTGACAACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAACCCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGCTTTGATGAAAAACTCTTGTCTCGATCAAAAAAATCAGTAGCAGAGCTTTCAATGAAACAGGGAAGTTCCTTGTCATCAGAAGATGCTTTTGAAGGTGAAGAAGAACTTCTAACTGAAGCCACCTTAGAAGAGGATGACACTGATAAAGAGGGTGATATTGTTAATGTTAACAATGAACACACATCTGTTAAACAAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGTACTAAACAGTATGTTTTTGCTGCTGCTACACTTCCAGTGAATGGAAAGAAGACAGCAGGAGGGATATTGAAATCTATGTTTCCTGATGCTGAGTGGGTTTGTGGAAATTATCTTCATTGTCACAATCCGAGATTGGAGCGAAAATGGATAGAAGTTACCGTTGAAACTCAAGTGAGTGAACTCATAAAGGCTGTGAATCACAGTTTCAGATCTGAAGATTTGGTCAATGCTGGTGGCATTCAAAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTACTCCGATCTGGGATTGAATGTTCATGCTATCATAAAAATTGCACATTGGAAGAGCGAGCACAGACCTTAGTTGATTTTCATGATAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGTGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTACACTGAACTCAACAGGGAACTTGTTGATGCAGTTCGTCGGGCAGAGGAACATGGTCAACCCTTGGAAACTGCATTTAGCAGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAGAGGGGTAATAACAAAGTCAGAGGCATTGCAACTATTAAAGAGAGTGCTCTAGCATGA 1737 0.4358 MIVTRSALVLHLQNPPIRYHFFSHFLKPTFPSLFRPGPFSLTTPRQTQARLFVSAVASSSSSQGSNGRDTFFAEENVSWTSLGLSDTISRALSDIGLNRPSLVQASSVPSVLSEKDVIIAAETGSGKTYSYLVPLIDKLRDAKEHSLHAVSDQEVTSTQKVLLILCPNVQLCEQVVRMANSLCGDDGEAIVSVAAICGRQGWPIREPEVIVTTPAALLNYVDLDRTRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSRSKKSVAELSMKQGSSLSSEDAFEGEEELLTEATLEEDDTDKEGDIVNVNNEHTSVKQRDWRRVRKNYERTKQYVFAAATLPVNGKKTAGGILKSMFPDAEWVCGNYLHCHNPRLERKWIEVTVETQVSELIKAVNHSFRSEDLVNAGGIQRTMVFANTVEAVEAVAKILLRSGIECSCYHKNCTLEERAQTLVDFHDKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTELNRELVDAVRRAEEHGQPLETAFSRKRSFRNKLKKRGNNKVRGIATIKESALA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01892 578 CDD DEADc 88 269 - -
Lapu3g01892 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 524 IPR027417 -
Lapu3g01892 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 105 IPR014014 GO:0003724
Lapu3g01892 578 SMART ultradead3 96 388 IPR014001 -
Lapu3g01892 578 Pfam Helicase conserved C-terminal domain 421 514 IPR001650 -
Lapu3g01892 578 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 87 547 - -
Lapu3g01892 578 Gene3D - 54 367 IPR027417 -
Lapu3g01892 578 Gene3D - 390 577 IPR027417 -
Lapu3g01892 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 108 323 IPR014001 -
Lapu3g01892 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 562 IPR001650 -
Lapu3g01892 578 SMART helicmild6 434 514 IPR001650 -
Lapu3g01892 578 CDD SF2_C_DEAD 412 523 - -
Lapu3g01892 578 Pfam DEAD/DEAH box helicase 103 268 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01892 Lapu-Chr3 34204400 34210153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01892 328 535 Eukaryotic Initiation Factors Gene Family AT5G11200 27.197 2.02e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01892 - - gmx:100789323 944.88