Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01888 AGTCTTGAAACCAAGACAACACCATCTCTCTCTCATCCATCAACCACACTCCCTCTCCCCCCTCTCTCTCCGCAAAATCACTTCTCCGGCGACATCTCCGGTCAGGTTCCGGCAACCTCTCCGCCAATTCCACATGGCAACATAATGAACTCGGAACCACCGGCAGCACTACTCATGTCGGTTTCCTGCATCTCCGACTACGACCTTCTCTGTGCCGAGGAAACCTCCGGCATCCTCTCCGGAGAGTTGCCGGAATGCTCGTCCGACATAGACTCCTCTCTATCGCCGCCATCACCACCAACATCCACGGAGGAGTATTCAATCGCCAGTTTCATCGAACACGAGCGCAACTTCGTCCCTAGATTCGAGTACCTCTCTAGGTTCCAATCTCACTCCCTCGACGCTGACGCCAGAGAGGAATCGATTGCATGGATTCTCAAGGTACACGAGTATTATGGCTTTCAACCTTTGACGGCGTACCTTGCCGTCAATTATATGGATCGGTTTATGGATTCTCGTCGGTTACCGCAAACAAATGGGTGGCCTCTGCAACTTCTATCTGTTGCATGTTTGTCTTTGGCAGCAAAAATGGAGGAACCTCTGGTTCCATCTCTTTTGGACCTTCAGATAGAAGGTGCCAAGTACATATTTGAGCCGAGAACAATTCGTAGGATGGAGCTACTTGTTCTGGGTGTCTTGGATTGGAGGCTAAGATCGGTAACCCCACTTTGTTTCCTCGCTTTCTTTGCCTGCAAAGTAGATTCAACAGAAACTTTTACCAGGTTCCTCATTTCCCGGGCCACAGAAACCATCGTGGCTAATATCCAAGAGGCTAGCTTTCTTGCTTACAGGCCATCATGCATTGCTGCCGCAGCCATACTTTCTGCGGCCAAGGAAATTCCTAATTGGGCTGCGCTTAAGCCTGAGCATGCTGAGTCATGGTGCGAGGGACTAAGAAAAGAAAAAATTATAGGGTGCTACCAGTTGATGCAAGAACTTGTGGTTAACAATAAGCATAGAAAACTCCCTTTAGTGTTGCCGCAGCTGCGAGTAACAACTCGGACTCGGGTGAGGTCAAGTGTCTCATCATTCTCGTCGTTCTCATCGTCATCTTCTTCATCCTCCTTTTCCTTGTCTTGTAAGAGGAGGAAATTAAATAACTGGGTAGACGACAAAGGAAACTCCTAG 1188 0.4891 SLETKTTPSLSHPSTTLPLPPLSPQNHFSGDISGQVPATSPPIPHGNIMNSEPPAALLMSVSCISDYDLLCAEETSGILSGELPECSSDIDSSLSPPSPPTSTEEYSIASFIEHERNFVPRFEYLSRFQSHSLDADAREESIAWILKVHEYYGFQPLTAYLAVNYMDRFMDSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQIEGAKYIFEPRTIRRMELLVLGVLDWRLRSVTPLCFLAFFACKVDSTETFTRFLISRATETIVANIQEASFLAYRPSCIAAAAILSAAKEIPNWAALKPEHAESWCEGLRKEKIIGCYQLMQELVVNNKHRKLPLVLPQLRVTTRTRVRSSVSSFSSFSSSSSSSSFSLSCKRRKLNNWVDDKGNS* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01888 395 CDD CYCLIN_AtCycD-like_rpt1 137 235 - -
Lapu3g01888 395 SUPERFAMILY Cyclin-like 241 345 IPR036915 -
Lapu3g01888 395 SUPERFAMILY Cyclin-like 105 237 IPR036915 -
Lapu3g01888 395 SMART Cyclin_C_2 240 371 IPR004367 -
Lapu3g01888 395 Pfam Cyclin, C-terminal domain 240 350 IPR004367 -
Lapu3g01888 395 ProSitePatterns Cyclins signature. 138 169 IPR006671 -
Lapu3g01888 395 MobiDBLite consensus disorder prediction 21 36 - -
Lapu3g01888 395 FunFam D2/4-type cyclin 121 238 - -
Lapu3g01888 395 SMART cyclin_7 143 231 IPR013763 -
Lapu3g01888 395 PANTHER CYCLINS 110 339 IPR039361 -
Lapu3g01888 395 MobiDBLite consensus disorder prediction 1 48 - -
Lapu3g01888 395 Pfam Cyclin, N-terminal domain 109 237 IPR006671 -
Lapu3g01888 395 Gene3D - 110 301 - -
Lapu3g01888 395 Gene3D - 121 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01888 Lapu-Chr3 34066966 34071660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01888 57 392 Core Cell Cycle Gene Families AT1G70210 57.353 5.18e-122 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01888 K18810 - gmx:100818190 530.02