Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01871 ATGTCGCTGGAGTTTATTGCAGGCATTTTCTCAACACTGGTAGTGGCCTTACTCTACTGGCTCTTCAGGAGAAAGGTCATTCCACTTCTTAAGCAACGAAAGACTTTGAAAGGAAAGGAACATAAAAGCTTTGAATATGATAAAATATCCTTAAGGTATTTTGATTTTAAGGAACTAGAGAGAGCAACAGAAAACTTTAGCCAAGATTGCTTGCTGGGTTCTGGTGCATTTGGAAATGTCTACAAAGGAACCTTTGACTTAGAAGGAACACTAGCCATTAAGAGAGCTCATTCTGAATCATTCTCAAGTGTGGATGAATTCAGAAACGAAGTTAGGCTCCTTTCATCTGTAAGGCACAGGAATCTTATTGGTCTTGTTGGATATTGTGAAGAACCAGAACAAGATGGAGCAAAAATACTAGTCTACGAATATGTTCCAAATGGTTCACTGCTAGAGTACATAATGGGAAGCAAAATGAGCTTAACGTGGAGGCGAAGAGTGAAAATAGCAATAGGAGCAGCAAGAGGCATAGCTTATTTGCATGAAGGTGTGAAACCAAGCATAATCCACCGTGATATCAAACCAAGTAACATCCTATTAGGGGAAGGTTTTGAGGCTAAGGTTTCGGATTTTGGGTTAGTAAAATCAGGGCCAACTGGTGATCAGTCACATGTCAGCAGCCAAATTAAAGGGACACCAGGGTACCTTGACCCTGCCTATTGTTCAAGCTTTCATTTGACCAAATTCAGTGACGTTTATAGCTTTGGTGTCATACTTTTGCAACTTGTTTCAGCTAGACCTGTGGTGGATTCCACTGAAAAACAAAGTAATCAACATATTATTGACTGGGCAAGGCCAACCATAGAGAAGGGAAGTGTTGAAGAAATCATAGATGCAAATCTACTATGTCAAAGTGAGCCATGCAATATGGAAGTTATGCTGAAGATGGGACAACTTGCTTTAAGATGTGTGGTTGAAGAACCAAAACATCGCCCAACAATGACTCAGGTCTGTCAAGAACTGGAGCGAGCCCTCTACTCAGCTGATAGCTTCAACAGCAACAAGCAGTGTTCAAAGGGATTCTTTACGCCAATTGGCTTATCCCAGCAATCACCGAAGTCGGAGACTCGGGGATCAGTTGAATCATATGATTGTTCACAGAGCTTTGTTAGTATCGATGGTGTTGGATTTCAGAAATTCCATGTTGATATGGATAGTTTCTCCTTTAAGAGCACAGACTTAAGGTGCCTAGAAAATAATAGTATTAGTATTGACATGGATAGAATATAA 1290 0.4039 MSLEFIAGIFSTLVVALLYWLFRRKVIPLLKQRKTLKGKEHKSFEYDKISLRYFDFKELERATENFSQDCLLGSGAFGNVYKGTFDLEGTLAIKRAHSESFSSVDEFRNEVRLLSSVRHRNLIGLVGYCEEPEQDGAKILVYEYVPNGSLLEYIMGSKMSLTWRRRVKIAIGAARGIAYLHEGVKPSIIHRDIKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSFHLTKFSDVYSFGVILLQLVSARPVVDSTEKQSNQHIIDWARPTIEKGSVEEIIDANLLCQSEPCNMEVMLKMGQLALRCVVEEPKHRPTMTQVCQELERALYSADSFNSNKQCSKGFFTPIGLSQQSPKSETRGSVESYDCSQSFVSIDGVGFQKFHVDMDSFSFKSTDLRCLENNSISIDMDRI* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01871 429 Gene3D Phosphorylase Kinase; domain 1 28 144 - -
Lapu3g01871 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Lapu3g01871 429 Pfam Protein kinase domain 69 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01871 429 CDD STKc_IRAK 72 343 - -
Lapu3g01871 429 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 145 348 - -
Lapu3g01871 429 Gene3D Transferase(Phosphotransferase) domain 1 145 361 - -
Lapu3g01871 429 SUPERFAMILY Protein kinase-like (PK-like) 45 342 IPR011009 -
Lapu3g01871 429 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Lapu3g01871 429 SMART serkin_6 66 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01871 429 ProSiteProfiles Protein kinase domain profile. 66 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01871 429 PANTHER OS01G0750732 PROTEIN 44 357 - -
Lapu3g01871 429 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01871 Lapu-Chr3 33726549 33729471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01871 35 364 Receptor kinase-like Gene Family AT2G21480 43.243 7.12e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Lapu3g01871 Pkinase 4.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01871 - - var:108328541 800.431