Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01870 ATGTGTGAGTTTGGAAGGAATGGGTGGGAGAGTGAGGTGAAGGATGAACTCCCTACCATTAGAGTTGAAGACATTTTTGGAGTCAGCTCCACCGAGATTGATCAATTATTGTTCGGCGATGTCAACTACCAACAACCATACAACTTACAGTACCAGCCATTGCCCCAGCAAACCTTCTTCCAATATCGTGCTACACCCCTCAATGGATACGTTACTCATGTTGACTCAGGTCTTGCTCAGTTACCCAACAACCTGCACGGTGGTTCTGCGGCACCGCGTCGACAGCGCAAGCCAAGGAAGACATGGAGCCTTCAAGAACACAGGTTATTTCTTGTTGCCTTTGAAAAGTATGGCGTGAGTTGGAAAAAGATTTCACAAGATGTTCTTCCAACTAAGACACCCTCTCAACTCGCCAGCCATGCCCAAAAATATTTCAAACGTCAGAACATGCCACTATCGCAGAGGAAAAGAAGAAGCATTCATGATATAACTCTGTGA 498 0.4578 MCEFGRNGWESEVKDELPTIRVEDIFGVSSTEIDQLLFGDVNYQQPYNLQYQPLPQQTFFQYRATPLNGYVTHVDSGLAQLPNNLHGGSAAPRRQRKPRKTWSLQEHRLFLVAFEKYGVSWKKISQDVLPTKTPSQLASHAQKYFKRQNMPLSQRKRRSIHDITL* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01870 165 CDD SANT 101 145 IPR001005 -
Lapu3g01870 165 ProSiteProfiles Myb-like domain profile. 94 145 IPR001005 -
Lapu3g01870 165 Gene3D - 102 149 - -
Lapu3g01870 165 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 149 IPR017930 -
Lapu3g01870 165 NCBIfam myb-like DNA-binding domain, SHAQKYF class 97 148 IPR006447 GO:0003677
Lapu3g01870 165 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 87 164 IPR043363 -
Lapu3g01870 165 Pfam Myb-like DNA-binding domain 99 145 IPR001005 -
Lapu3g01870 165 SUPERFAMILY Homeodomain-like 95 149 IPR009057 -
Lapu3g01870 165 ProSiteProfiles SANT domain profile. 97 149 IPR017884 -
Lapu3g01870 165 SMART sant 98 147 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01870 Lapu-Chr3 33715496 33716098 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu3g01870 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01870 - - pvu:PHAVU_003G267300g 179.489