Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01869 ATGGAGTCTGAGCCAAATCAATGCCCTTTCATGGGTTCCTTCGGGAATTTCGTTGACAGGGTCAAAAGGGTTTGTACCCTCTTCATCTCTGCCATCGTTGGGAACATCTTATCTGCGATCTTGACCTTCTGCTTTGCATTAGTGGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGCTTCATTCGAGGGGCTGCTATTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCTCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGCCTTATACTTGATTGATGTTTTTGCTAGCCTATTGAGTGGAAGACTAGTTCGTGAAAGAATAGGCCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAAATAAGCTTTGATGAGGTTCAAAACCTCTTTGACATTGGCGTGGCCAAAGGCTTACCGAGAGATTCAGTTGAAAAGATCCCAACGATCACAATTACAAGTGACAACAATGTTGATGCTTATGGGGAGAGACTTTCATGTTCTGTTTGCCTCCAGGACTTTCAGCTTGGGGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATGTTTCATCTACCTTGCATTGATAAGTGGCTGATCAAGCATGCTTCTTGTCCATTATGCAGAAGGGATCTGTAA 696 0.4483 MESEPNQCPFMGSFGNFVDRVKRVCTLFISAIVGNILSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLVLWKSDESGIGCALYLIDVFASLLSGRLVRERIGPAMLSAVQSQMGAVEISFDEVQNLFDIGVAKGLPRDSVEKIPTITITSDNNVDAYGERLSCSVCLQDFQLGETGRSLPHCHHMFHLPCIDKWLIKHASCPLCRRDL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01869 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 231 IPR013083 -
Lapu3g01869 231 SMART ring_2 186 227 IPR001841 -
Lapu3g01869 231 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 230 IPR044523 -
Lapu3g01869 231 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Lapu3g01869 231 FunFam NEP1-interacting protein-like 1 146 231 - -
Lapu3g01869 231 Pfam Ring finger domain 185 228 IPR001841 -
Lapu3g01869 231 Pfam YMGG-like Gly-zipper 45 81 IPR027367 -
Lapu3g01869 231 SUPERFAMILY RING/U-box 177 231 - -
Lapu3g01869 231 CDD RING-H2_NIPL1-like 185 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01869 Lapu-Chr3 33683742 33685876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01869 18 231 C3H Transcription Factor Family AT5G66070 72.430 6.73e-110 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01869 - - gmx:100816939 416.387