Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01847 ATGGAGTGTCTGGAAGCAGTGTTGAAGAGCAGTTTTAGGAAAGACGTGGCCCTCAAACTCAGCCCCCAAACGTTGCCGGAGGACCTTAACATTCAAAACGTCACCTCTTGCGACGACTTCTTCGTTGACGACCTCCTCGACTTTTCGCTCCTCGAAAACGAAGAATCCGACCAACACAAACATAACCTGCATTCAACTTCTGTTTCTCCCTACAACAACAACAACCACTACCATGTTTACAATTGCAACCACTCCTTCGACGACAATTTCAATACCGAACTCACTCTTCCGGCGGAGGAAGTTGCGGACTTGGAATGGGTATCTCATTTCATCGAAGATTCTTTCTCCAAATACTCTCTTTCCTTCCCCGCTACCGTCACACAGAGCCTCGCTGAGAAACCGCCGGAACCGGGAAACCCCGGTTTCACTTTTAAAACCCTCGTTCCGGCCAAGCCAAGGAGCAAGCGAACCAGAACCGGTGTTCGGGTTTGGCCACTCAGGTCACCCTCGTCTTTCACCTACACGACATCTCCCTCCAGCCCTTTGCTAATTAGCGCCGCCGTGTATAAAGACAACCACCCGGAGGATAAGAGGGCAAAGAAACGGGCCGCACCGGACGGTGGGGCGGCGCGCCGGTGCAGCCATTGCGGCGTTCAGAAAACCCCTCAGTGGCGAACCGGACCGCTTGGAGCGAAGACCTTGTGCAATGCGTGTGGAGTTCGGTACAAGTCGGGTCGGTTATTACCCGAATACAGACCCGCGTGTAGCCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTCTGGAGATGCGGCAGAAGAAGGAGACGGGGCCTGAACCGGATACCGGTTCGCCACCGTCGGTTCCCGGTTTTTGA 888 0.5417 MECLEAVLKSSFRKDVALKLSPQTLPEDLNIQNVTSCDDFFVDDLLDFSLLENEESDQHKHNLHSTSVSPYNNNNHYHVYNCNHSFDDNFNTELTLPAEEVADLEWVSHFIEDSFSKYSLSFPATVTQSLAEKPPEPGNPGFTFKTLVPAKPRSKRTRTGVRVWPLRSPSSFTYTTSPSSPLLISAAVYKDNHPEDKRAKKRAAPDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKETGPEPDTGSPPSVPGF* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01847 295 CDD ZnF_GATA 212 260 IPR000679 GO:0006355|GO:0043565
Lapu3g01847 295 PANTHER GATA TRANSCRIPTION FACTOR 28 289 - -
Lapu3g01847 295 Gene3D - 206 280 IPR013088 GO:0006355|GO:0008270
Lapu3g01847 295 ProSiteProfiles GATA-type zinc finger domain profile. 207 243 IPR000679 GO:0006355|GO:0043565
Lapu3g01847 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 205 269 - -
Lapu3g01847 295 SMART GATA_3 207 261 IPR000679 GO:0006355|GO:0043565
Lapu3g01847 295 MobiDBLite consensus disorder prediction 193 214 - -
Lapu3g01847 295 Pfam GATA zinc finger 213 247 IPR000679 GO:0006355|GO:0043565
Lapu3g01847 295 PIRSF Txn_fac_GATA_plant 3 289 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lapu3g01847 295 MobiDBLite consensus disorder prediction 273 295 - -
Lapu3g01847 295 FunFam GATA transcription factor 202 286 - -
Lapu3g01847 295 ProSitePatterns GATA-type zinc finger domain. 213 238 IPR000679 GO:0006355|GO:0043565
Lapu3g01847 295 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01847 Lapu-Chr3 32836459 32837855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01847 5 295 C2C2-Gata Transcription Factor Family AT5G66320 45.994 1.02e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu3g01847 GATA 4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01847 - - pvu:PHAVU_003G258900g 520.776