Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01837 ATGCAAAACAACACACCTTCAAATTCAAAGCCTTCAACTTCGATTATGCGAACGCTTTGTGATGCTTGTGAGAGCGCTGCTGCTATCGTTTTCTGCGCTGCTGATGAGGCCGCGCTATGCCGTGCCTGTGATAAGAAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATGTAAGGGTTGGTCTAGCAAGTCCAAGTGATGTACCGCGCTGCGACATTTGTGAAAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCGCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGGACACATGAAAGATACCTTCTTTTTAGGCAGAGAGTTGAGTTCCCAGGAGATAAACCTGGTAAGTCAGAAAACCCAGCTTCACAACCTCTGGATCCAGGTGAGACTAAAAGAGGACAAAATGCACTTCCCAAAATAAAAATGGGAGAAAAACAGCAAAATCACAGGATGCCTCTGATTCTGACGCCAGAACCTAATGCTGATGAGCATGCCATGATGGGAACCAAAATGATTGATTTGAATATGAAGCCCCAGAGAATACATGAACCAACATCAAATAATCAGGTTAGGATGCATGGAAAAATTTCATCTCACTACACTTGA 633 0.4329 MQNNTPSNSKPSTSIMRTLCDACESAAAIVFCAADEAALCRACDKKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHERYLLFRQRVEFPGDKPGKSENPASQPLDPGETKRGQNALPKIKMGEKQQNHRMPLILTPEPNADEHAMMGTKMIDLNMKPQRIHEPTSNNQVRMHGKISSHYT* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01837 210 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Lapu3g01837 210 MobiDBLite consensus disorder prediction 118 143 - -
Lapu3g01837 210 PANTHER B-BOX ZINC FINGER PROTEIN 22 16 157 - -
Lapu3g01837 210 CDD Bbox1_BBX-like 19 62 - -
Lapu3g01837 210 Gene3D Classic Zinc Finger 16 110 - -
Lapu3g01837 210 SUPERFAMILY B-box zinc-binding domain 63 102 - -
Lapu3g01837 210 ProSiteProfiles Zinc finger B-box type profile. 66 111 IPR000315 GO:0008270
Lapu3g01837 210 CDD Bbox1_BBX-like 71 111 - -
Lapu3g01837 210 Pfam B-box zinc finger 67 107 IPR000315 GO:0008270
Lapu3g01837 210 Pfam B-box zinc finger 18 57 IPR000315 GO:0008270
Lapu3g01837 210 SMART bboxneu5 66 111 IPR000315 GO:0008270
Lapu3g01837 210 SMART bboxneu5 15 62 IPR000315 GO:0008270
Lapu3g01837 210 MobiDBLite consensus disorder prediction 191 210 - -
Lapu3g01837 210 FunFam B-box zinc finger protein 19 17 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01837 Lapu-Chr3 32277652 32284008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01837 16 198 C2C2-CO-like Transcription Factor Family AT4G38960 62.295 1.82e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lapu3g01837 zf-B_box 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01837 - - vun:114176173 412.92