Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01830 ATGAGAACACGAAATGCTGATCCCGCTTCCAAATCCGCAACCCTTAAGAAGACGCCTCCGGCGAGGAAATCCCCTGGGGCGAAGCGCATCCCCGCCACCAAAACCAGAAGCACAAAGAACAAAGAGGTCTCACCCGCACCCGATTCCAACACCGATCAACCTCCTGTGGAGCAGGAACCGTTAGCTAGTGGTAGCAGTATAAACATCGTGAGAAAGAAAGCTCCAGGGAGACCTAGAATTAAAACAATTGATACTCCCAGTTTGGAAGAACAACGTGAGGGAGTAGGTGATGAAACTCCAATTGAAGACAAACCCGAGGCTGCAGAGAAACTGGAAGATGTTGAAGTTGTTGATGCAGATAATACTGAGGGTGAGAAAGAGGGTGAACAAGGTGTTGGGTCTTTCGAAGAGAAGGAACAGAAGTCGATGGAAGTGGATGAACCTGTTGTTGAAAAGGGCAATGACATAACGGGAGTTGAAGTAATTGCTTCACAGGATGTTTCTGTTTCTTTTCAGCGTCCAGGGCGGCCCGTTGTGGACCTCAATATATCTGCAGATAATGAAGATTGTACTGCTGAAAAGGAGGGGGAGAAAGGAAAAGAACTGTTGAAAGATCAAGTGGGGGACACAGGAAAGGAGAAGTTGAAAGAACATGAAGGAGATGAAGAAAAGGAAGAGGTGAAAGTGTCTGAAGGGGACAAAGGAAAGGAAGAGTTTAAAGAACTGGAAGGAGACGAAGGAATGGAAGAGTTGAAAGAACTGGATGGGGAGAAAGAAAAGGAAGATTTGAAGGAACTCGATAGAGAGAAAGAGTTGAAAGAACTCGAAGGAGAGAAAGGTAAGGAAGAATTGATGGAACGGGAAGCAGAGAAAAGTAAAGAAGAGATGATAAAACAAGAAGGACATAAAGGAAAGGTTGAGTTGAAAGAACAGGAAGTAGACAAAGGAAATTTGAAAGAGCAGGATCCAGAGAAAGCGAAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACATTGAGTCTCTTGGTGTAGAAGTGACAGCCCAGATGCAAACAGAAGATGCTAATCCCATTAAAAGTGGTGGTGAAGGACCAAAGAGCGGTGAAAAGTTAGGTGAAAAGTTAGATCTTCGAGAACAAGGGAAGGTAGTTGAAGAAGATCCGGAGGAAGATCCAGAAGAACCTCCAGAAGAAATTGAGGCGATAGAGGAGGAACATAGGGAATTAGAGGCCATTGCAAATCAGCGAAAGATTAAAAAAGAGCATGAGATTTTTGTTGGTGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAACGTTTTTCAGAGGATTGGGGAGATAGTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAGAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCTAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGTAAACGGTGTGGTACTGCACCTAGTGAGGATAATGACACATTGTTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCTATTAAACAGAAGCTGAAGAACTATGGTATTGAAGGGGTTGAAAACATTACGCTTGTCCCAGATGTTCAACATGAGGGCTTGAGCCGGGGCTTTGCATTTGTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCTGATGTTATCTTTGGTCATGCTGAACGAACTGCCAAGGTAGCCTTTGCTGAACCTATGCGTGAGCCTGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCAAACTGGAACGAAGATCATGTGAAGGATCTATTTAAATCTTATGGTGAAATTGTAAGAATCGTGTTAGCACGGAATATGTCTACTGCTAAGAGGAAGGATTATGGATTTGTTGATTTTCTTACACATGAAGCTGCTGTAGCTTGCGTTGATGGTGTAAATAAATCAGAAATGGGTGATGTTGCATCAAAGATAAAAGTGAGAGCTAGACTCTCAAATCCTCTGCCTAAAACACAGGCTGTCAAGGGTGGTATGTGTGGTGGGTTCCGAATTGGTCAGGCTAGGAGTGCAGCCTTTTCAAGACCAGGGAGGGGGCTTGGGCGAGGAAGACAACCCTTCAACAACAGGGGAAATTTCAACAGGGATAGGAGTTTCTATCATGGAAGACACAGTCAAGTTGGAAGAATGGGTTTTCGGGATGACCTCAATTTTAATATACATCCAGATTTCCGTCACAGACAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACACTATGCTGGTAGCCGAGGTGCTTCATTTGCTGGACCATCTAGACCTTATCATGATAGAACATGGTATGGTATGCCTGATGGAGGCCCCAGTGAGCCTATTCCTCCAAGGAGGACCTACTCCCCAGGTGGACAATTTGACATGCCTTTTATGGGCAGACATTTTGATGATCCATATCCGTATGATGACAATATGCATGGAATGAAACGGCCATTTTATATGACTGATCCTGAACCTGATTACATGGGGCCTAATAGACTTCGTCCACGGTTGGATTATGCAGATCCTCCTATATTTCATGGAACTCGTCACCATGATTCTTTTGGGGCTGGCAGCAGACAGTACCCACCTGACTACTATGGTTCCGATTATGGTAGAGGTTCATATTCATCTTATTACGGGGCTGATGGCTCACATGGACATGGATACTACTAG 2754 0.4401 MRTRNADPASKSATLKKTPPARKSPGAKRIPATKTRSTKNKEVSPAPDSNTDQPPVEQEPLASGSSINIVRKKAPGRPRIKTIDTPSLEEQREGVGDETPIEDKPEAAEKLEDVEVVDADNTEGEKEGEQGVGSFEEKEQKSMEVDEPVVEKGNDITGVEVIASQDVSVSFQRPGRPVVDLNISADNEDCTAEKEGEKGKELLKDQVGDTGKEKLKEHEGDEEKEEVKVSEGDKGKEEFKELEGDEGMEELKELDGEKEKEDLKELDREKELKELEGEKGKEELMEREAEKSKEEMIKQEGHKGKVELKEQEVDKGNLKEQDPEKAKGEETNLFGHEENIESLGVEVTAQMQTEDANPIKSGGEGPKSGEKLGEKLDLREQGKVVEEDPEEDPEEPPEEIEAIEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRNVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKNYGIEGVENITLVPDVQHEGLSRGFAFVEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPMREPDPEIMAQVKSVFINGLPPNWNEDHVKDLFKSYGEIVRIVLARNMSTAKRKDYGFVDFLTHEAAVACVDGVNKSEMGDVASKIKVRARLSNPLPKTQAVKGGMCGGFRIGQARSAAFSRPGRGLGRGRQPFNNRGNFNRDRSFYHGRHSQVGRMGFRDDLNFNIHPDFRHRQFGPQGAVRGGHYAGSRGASFAGPSRPYHDRTWYGMPDGGPSEPIPPRRTYSPGGQFDMPFMGRHFDDPYPYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTRHHDSFGAGSRQYPPDYYGSDYGRGSYSSYYGADGSHGHGYY* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01830 917 SUPERFAMILY RNA-binding domain, RBD 591 698 IPR035979 GO:0003676
Lapu3g01830 917 SMART rrm1_1 424 497 IPR000504 GO:0003723
Lapu3g01830 917 SMART rrm1_1 602 675 IPR000504 GO:0003723
Lapu3g01830 917 SMART rrm1_1 504 581 IPR000504 GO:0003723
Lapu3g01830 917 Gene3D - 589 743 IPR012677 -
Lapu3g01830 917 Gene3D - 502 587 IPR012677 -
Lapu3g01830 917 MobiDBLite consensus disorder prediction 77 152 - -
Lapu3g01830 917 FunFam Heterogeneous nuclear ribonucleoprotein Q 376 497 - -
Lapu3g01830 917 MobiDBLite consensus disorder prediction 1 152 - -
Lapu3g01830 917 CDD RRM_SF 603 677 - -
Lapu3g01830 917 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 603 668 IPR000504 GO:0003723
Lapu3g01830 917 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 425 493 IPR000504 GO:0003723
Lapu3g01830 917 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 505 573 IPR000504 GO:0003723
Lapu3g01830 917 CDD RRM_SF 505 568 - -
Lapu3g01830 917 Coils Coil 256 295 - -
Lapu3g01830 917 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 423 501 IPR000504 GO:0003723
Lapu3g01830 917 Gene3D - 353 499 IPR012677 -
Lapu3g01830 917 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 503 588 IPR000504 GO:0003723
Lapu3g01830 917 Coils Coil 400 420 - -
Lapu3g01830 917 MobiDBLite consensus disorder prediction 190 336 - -
Lapu3g01830 917 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 601 681 IPR000504 GO:0003723
Lapu3g01830 917 MobiDBLite consensus disorder prediction 367 386 - -
Lapu3g01830 917 MobiDBLite consensus disorder prediction 31 65 - -
Lapu3g01830 917 MobiDBLite consensus disorder prediction 190 399 - -
Lapu3g01830 917 FunFam Heterogeneous nuclear ribonucleoprotein Q 503 587 - -
Lapu3g01830 917 MobiDBLite consensus disorder prediction 709 734 - -
Lapu3g01830 917 FunFam Heterogeneous nuclear ribonucleoprotein Q 588 739 - -
Lapu3g01830 917 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 207 917 - -
Lapu3g01830 917 SUPERFAMILY RNA-binding domain, RBD 424 568 IPR035979 GO:0003676
Lapu3g01830 917 CDD RRM_SF 425 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01830 Lapu-Chr3 31908381 31928169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01830 424 669 Eukaryotic Initiation Factors Gene Family AT2G23350 24.506 1.12e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01830 - - gmx:100784338 1035.79