Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01808 ATGGAGGCTGAGGCGCAAATCTCTCACGATTCAAATACTCAATTTCAGCCAGAGCCTGTTGTATCAGTTCAAAATGGGGATCCTGGTGTTTCCTCATCTGTGGCAAGTGCTGTTATCCCTCAGCAGCCAGCTACAAAAAAACCAACTAGGCAGTGGGCTGCGTGGACTCGACAAGAGGAGGAGAGTTTCTTCACTGCATTACGACAAGTTGGGAAGAATTTTGAGAAAATCACTTCCCGTGTACAAAGTAAAAACAAAGATCAGGTCAGACATTATTACTACCGGCTTGTGAGGCGGATGAACAAACTTCTTGGTCCAGGGCTATGTTTGGATGCCAAAAACTCTAAAGATACTAATGCTGCAATGCTTCGCTGGTGGTCTTTATTGGAAAAGTATAGCTGCAAGGCCTCAAAGCTTCACCTGAAGCCACGGAGATTTAAAATATTTTTAGAAGCCTTGGAGCACCAACTATTGAAGGACCGAAAGAAGAGTGTAAGGAAGCGACCCTTGCCAGGGGGAAATTGTCTTCCTCCTGTGCCTACTGCAGTCTCAAATCAAAGTAGAGCATCAGGAAATGAGGCCCGTGCAGTTAAACTGGTTCTTGTTGACAGTCAAAATATTCTTAAATTGGGACCTTCAAAATCATCAATGAAGCGCAATGTAAACATGGGTGTTAGCCGTAGTAACACTAAAGGAGATTCAAATACCATGAAATCAACAAGGCAACGAAAGAAATCTGGTATGATTTCAACGGCCGCATATAGAAAATGGGAGAAGGCTGCAATTGCAGGTGTTTCTTTAGTTGCTGATGCTGCGGAGCATTTGGAGCGAGCTGCAACAGTTAGAGAGATTGAACAAGACCAGGAGAATTCAGGAGAAAGGTGTTCTGATCCAACTGATTATGTCCTGCCCTCTTTACCCACATGTCCACAAAATCAATTTGTTGATAACAATTTGAATAATAGTATGAAACTTAAGCTCCAGCTATTCCCAATTGATGAACCTACTCGAAGAGCATTGGAAGTGGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTGGAACATCTAAACCGTAAATGGGGTCATTCAAGCATAGCAGTTGGAGAACTAATGCTTTTTCCTTACGGTATTCAAAGGGAAAACTTGGTTAATTATCAGAGATGGACCCAGGAATCTACTCTTAGTGCAGCTGATATATATGCAATGATTGGAAGTCCACCCATATTTCGTTTAAGGTATGGTTGGTTCTCCAATACTGAACTTGGATTATTAAATATGCAAGTGCCTGTAGCATCCGGCTCCATGCTCATGCAATCCAAAAGTAGTGTGTACAATTCTAAGGATCAGATTGTGAATTCAGTTTCATTTCCTACTCCATCAACCAATACTCATTCCATGGAGCTCCCTGAAGATTGTAGAATATCTATGAACAGAAACCATACTCTTATGACCTCTTTAGCTGATGTGCCCAACGCTAGAGGCAACAGTGCTCACCTGAATACAAGCTCTGAGGACTCTCGTCGTCCTACAGGCAACACATTGTGGCATGAAAAAGATGTTAGGGATGGAGCTGTAACTACACAGTTAGAAGACTTGGATGAATTAAAATTAAGCAGTGGAACAGGACTGTCAGCTGGAGAATGGGCTGATAGCCTCACCAACATTAGTGTGGGGGATCTACTTTCAGGAGTGTCCCAGGATCTCGAAGGTGACTGCATTAATCCTCCTATTGCTGAGAATTGTCATGATGCTCAGCAAATTCCTTTTAGTAGTGATTCTTTTGATGCTGCTATTGCTGCCCACATATCTAGACACCAAGACAAGATCGAACAATCATCATTTACGGCCCATATGTCTTCCATCTGGGATGCTGAAGAAACTTGTGATGCCTTTTTATTCAGAAAAGATCCTATTCTTCATGTAGATCGTCCTTGTTTGTCTCCAGTTACTTCTTTACAGTCTGAGAAAAAGGTTCCCGAAAGAAGCTTTGAGAAATTGGATGAGTTGTCACCTGAAAGAGAGAGGCTTGTGGATGATTTTGTTCAATCAGACCCTATGGCTATGGACAGTTCCGAGTCTGAAGTAGATATCCATGATCATTTAGGAAAGGATTTTAGTGCGCTAGCAGATATGTATTGGCCTGATTCCTTGGGACCTTTGGATTTGGATATACCATCATCAACTAAGTATCATAGCGAAGATCTAATTTTTAGTGATAGTCTTAGTGGACTGAATCGCTTGATAGCAAGCAGCCTGGATGCATTTCAGAATTGCTCGTTTTTTGGGTTTGACAAGAAGGAAGCACCATCAACAGTTGAGGCTCGAGAATCTGCCACTCTTTCAGATTTTAAAATTGGAAGTAGTATCTGA 2400 0.4183 MEAEAQISHDSNTQFQPEPVVSVQNGDPGVSSSVASAVIPQQPATKKPTRQWAAWTRQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFLEALEHQLLKDRKKSVRKRPLPGGNCLPPVPTAVSNQSRASGNEARAVKLVLVDSQNILKLGPSKSSMKRNVNMGVSRSNTKGDSNTMKSTRQRKKSGMISTAAYRKWEKAAIAGVSLVADAAEHLERAATVREIEQDQENSGERCSDPTDYVLPSLPTCPQNQFVDNNLNNSMKLKLQLFPIDEPTRRALEVDKHNPHLELTLSTRKKISSILEHLNRKWGHSSIAVGELMLFPYGIQRENLVNYQRWTQESTLSAADIYAMIGSPPIFRLRYGWFSNTELGLLNMQVPVASGSMLMQSKSSVYNSKDQIVNSVSFPTPSTNTHSMELPEDCRISMNRNHTLMTSLADVPNARGNSAHLNTSSEDSRRPTGNTLWHEKDVRDGAVTTQLEDLDELKLSSGTGLSAGEWADSLTNISVGDLLSGVSQDLEGDCINPPIAENCHDAQQIPFSSDSFDAAIAAHISRHQDKIEQSSFTAHMSSIWDAEETCDAFLFRKDPILHVDRPCLSPVTSLQSEKKVPERSFEKLDELSPERERLVDDFVQSDPMAMDSSESEVDIHDHLGKDFSALADMYWPDSLGPLDLDIPSSTKYHSEDLIFSDSLSGLNRLIASSLDAFQNCSFFGFDKKEAPSTVEARESATLSDFKIGSSI* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01808 799 MobiDBLite consensus disorder prediction 500 519 - -
Lapu3g01808 799 MobiDBLite consensus disorder prediction 163 190 - -
Lapu3g01808 799 MobiDBLite consensus disorder prediction 212 247 - -
Lapu3g01808 799 MobiDBLite consensus disorder prediction 1 49 - -
Lapu3g01808 799 Gene3D - 18 104 - -
Lapu3g01808 799 SUPERFAMILY Homeodomain-like 46 101 IPR009057 -
Lapu3g01808 799 Pfam Myb-like DNA-binding domain 54 96 IPR001005 -
Lapu3g01808 799 PANTHER CRAMPED PROTEIN 37 772 - -
Lapu3g01808 799 MobiDBLite consensus disorder prediction 500 524 - -
Lapu3g01808 799 FunFam TSL-kinase interacting protein 1 55 116 - -
Lapu3g01808 799 SMART sant 51 99 IPR001005 -
Lapu3g01808 799 FunFam TSL-kinase interacting protein 1 16 104 - -
Lapu3g01808 799 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Lapu3g01808 799 ProSiteProfiles SANT domain profile. 55 101 IPR017884 -
Lapu3g01808 799 CDD SANT 54 97 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01808 Lapu-Chr3 31221622 31228968 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu3g01808 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01808 - - gmx:100798411 1396.33