Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01801 ATGGCGGAAGAGCGATTCACGGGCGTTGTGCAGTGGTTCAACAATGGCAAGGGCTTCGGCTTCATCAAGCCCGACGACGGCGGCGAGGATCTCTTCGTCCACCAGTCCTCCATCAGATCCGACGGCTACCGCACTCTCCTCGAGGGCGATCGCGTCGAGTTCGCCATCGCCACCGGCGACAACGACAAGACCAAGGCCGTTGACGTAACCGGCATAGACGGTGCTCCTCTCCAGCCCCGCGCCGCCGCCGGCAACCGCGGCTCTGGCTACGGCTTCGGCACCAGGCGGAATGGCGGGGGCGCGGGCGGTGCCGCGTGCTACCAGTGCGGCGATTTTGGCCACCTCGCCAGGGACTGCAACCGGAGCAGCAATTCCGGCAGCGGAGGAGGTGGCGGGTGCTTCGTCTGCGGCGGCTTCGGTCACCTCGCGAGGGATTGCGTGCGCGGAGGCAACGGCGGAGGCGGAGGAGGCGGCGGAAGCGGCGGCGGAAGCGGCTCTTGCTTTAGGTGTGGCGGATTTGGACACATGGCGAGGGATTGCGCCACTGCGAAGAACGTCGGTGGTGGTGGTGGCGGTAGCGGTGGCGGTAGCAGTGGCGGTTGTTTTCGGTGTGGGGAGGTTGGTCATTTGGCCAGGGATTGCGGCATTGAAGGAGGAAGGTATGGTGGTGGTAACAGTGGTGGCGGCGGCGGCGGCGGTGCTGGGAAGAGCACCTGCTTTAATTGTGGGAAGCCTGGGCATTTTGCGAGGGAGTGTGTTGAGGCTTCTGGGTGA 774 0.6525 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGIDGAPLQPRAAAGNRGSGYGFGTRRNGGGAGGAACYQCGDFGHLARDCNRSSNSGSGGGGGCFVCGGFGHLARDCVRGGNGGGGGGGGSGGGSGSCFRCGGFGHMARDCATAKNVGGGGGGSGGGSSGGCFRCGEVGHLARDCGIEGGRYGGGNSGGGGGGGAGKSTCFNCGKPGHFARECVEASG* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01801 257 PRINTS Eggshell protein signature 159 174 - -
Lapu3g01801 257 PRINTS Eggshell protein signature 222 240 - -
Lapu3g01801 257 PRINTS Eggshell protein signature 186 196 - -
Lapu3g01801 257 PRINTS Eggshell protein signature 98 109 - -
Lapu3g01801 257 ProSiteProfiles Zinc finger CCHC-type profile. 239 252 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 SUPERFAMILY Retrovirus zinc finger-like domains 159 215 IPR036875 GO:0003676|GO:0008270
Lapu3g01801 257 SMART c2hcfinal6 200 216 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 SMART c2hcfinal6 132 148 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 SMART c2hcfinal6 238 254 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 SMART c2hcfinal6 166 182 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 ProSiteProfiles Zinc finger CCHC-type profile. 133 146 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 Gene3D - 1 82 IPR012340 -
Lapu3g01801 257 Gene3D - 231 257 - -
Lapu3g01801 257 Gene3D - 195 222 - -
Lapu3g01801 257 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lapu3g01801 257 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lapu3g01801 257 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lapu3g01801 257 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 Pfam Zinc knuckle 166 181 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 Pfam Zinc knuckle 132 146 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 Pfam Zinc knuckle 238 252 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 Pfam Zinc knuckle 200 214 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 Pfam Zinc knuckle 105 119 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lapu3g01801 257 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lapu3g01801 257 SUPERFAMILY Retrovirus zinc finger-like domains 97 148 IPR036875 GO:0003676|GO:0008270
Lapu3g01801 257 Gene3D - 100 150 - -
Lapu3g01801 257 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Lapu3g01801 257 ProSiteProfiles Zinc finger CCHC-type profile. 201 214 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Lapu3g01801 257 SUPERFAMILY Retrovirus zinc finger-like domains 222 253 IPR036875 GO:0003676|GO:0008270
Lapu3g01801 257 PANTHER COLD SHOCK DOMAIN PROTEIN 2 187 254 - -
Lapu3g01801 257 SMART csp_8 7 72 IPR011129 GO:0003676
Lapu3g01801 257 ProSiteProfiles Zinc finger CCHC-type profile. 167 180 IPR001878 GO:0003676|GO:0008270
Lapu3g01801 257 Gene3D - 151 190 - -
Lapu3g01801 257 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01801 Lapu-Chr3 31052597 31055978 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lapu3g01801 CSD 1.3e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01801 K09250 - gmx:100806783 360.147