Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01797 ATGGGTTCTATTGGAATCAAAAGCTCGGGATCCGAGGTTGTCACCGTTGATGTTCATGCAGCCAAGGGTTTGATCCAGACCAGTCATGTTTATCTCGATGTCAGGACGGTGGAAGAGTTTGAGAAAGGGCATGTGGATGCTGAGAAGATCATTAACATTCCTTACATGTTTAATACACCAGAAGGTAGGGTGAAGAACCAGGAGTTTCTGAAGGAGGTTTCATCAGCTTGCAAGAAAGAAGATCGCATCATCGTGGGTTGTCAAAGTGGAGTGAGATCTGTGTATGCAACTACTGATCTTCTGACCGAAGGCTTTAAGGATGTGAGCAACATGGGAGGAGGATATCTTGACTGGGTTAAAAATGGATTTCCAGTGAAAACACCTTTGGACTTGGTTAAAGCTGAAGTTCAAGTGAAAGCACCTTTGTGTTAG 432 0.4398 MGSIGIKSSGSEVVTVDVHAAKGLIQTSHVYLDVRTVEEFEKGHVDAEKIINIPYMFNTPEGRVKNQEFLKEVSSACKKEDRIIVGCQSGVRSVYATTDLLTEGFKDVSNMGGGYLDWVKNGFPVKTPLDLVKAEVQVKAPLC* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01797 143 Pfam Rhodanese-like domain 25 120 IPR001763 -
Lapu3g01797 143 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 12 125 IPR036873 -
Lapu3g01797 143 SMART rhod_4 16 124 IPR001763 -
Lapu3g01797 143 PANTHER THIOSULFATE SULFURTRANSFERASE 18 7 127 IPR044684 GO:0003824
Lapu3g01797 143 FunFam Thiosulfate sulfurtransferase 16, chloroplastic 3 126 - -
Lapu3g01797 143 CDD RHOD 20 119 - -
Lapu3g01797 143 Gene3D - 6 127 IPR036873 -
Lapu3g01797 143 ProSiteProfiles Rhodanese domain profile. 29 127 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01797 Lapu-Chr3 30815209 30828360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01797 3 127 Sulfurtransferasese or Rhodanese AT5G66170 59.200 2.91e-53 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01797 - K15692 pvu:PHAVU_003G264200g 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01797 3 30815209 30828360 Lapu3g01797 3 30815209 30828360 ECH
Lapu2g00765 2 6860286 6861910 Lapu3g01797 3 30815209 30828360 PCT