Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01791 ATGGGTGCCAACTGCAGACACGTTTTTGATAGATTACTGAGTTCGAGTTTTGCCACTTACTGGAAGAAAAGCACCACGCCAACTGGCAGACGAATTTTCCACAGGGATGTGGAAAAGGAAGAATTCCAGTATGCCAACACTCAATGTCTCTCATCCTACTACAGTGTCTTTGTGGTTCGTCTTGCAATCATGGCCATGCTAGCCATCTTGATTGGTCTGCTCACTTTCCTCACATGGCATTTCACAAAGATTTATACGACAAAATCTCTTAATAGCTTGGCATATGACCTGCGTTGTGAACTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTGCTGAAATTACTACTGCTCAGGTTAAGCTGTCTCAGTATGTGATCAGAAGCCACACCACCAACCTTGCCACTCAAGCAGACCAAGTTGAGATGTATGACGCGATGAGAGCTGTGACGTGGGCACTGTTTGCCAGTAAAAAAGCTCTGAATTCAATAACTGTCAAATACAAGAATGGATTTGTCCAAGCATTCCATAGAGACCTGAAGGAAAACAACACCTTTTACATTTATTCTGATCTTGCAAATTACTCCATGGCTGCCAGTGGCCACAATGAGATCAATTCGCTTTCATCGCACGAAGCTTGGAATGATAAAGACATTCACGGAAACAAGTCTGCTATTTGGTATCGTGAACCGCTTGATCCGGTTAGTGGGGAGAAGATTGGAAAAGTAATGCCAATTGCGCCAGAAGACTCAATTAATATAGCAGGCCTCTCCCAGGTACCTGATGGTGTAGCTTCATGGCATGTTGCTGTGAGCAAGTTTACAGATTCACCGTTGCTTTCTGCAGCATTGCCAGTTTGGGACTCTTCAAATAAAAGCATTGTGGCAGTTGTGGGTGTCACAACTGCACTTTATAGTGTGGGGCAGCTCATGAAAGAGCTAGTTGAGTTGCACAGTGGTCACATGTATTTGACTTCCCAAGAGGGTTTCTTGCTTGCAACTTCCACAAATGCACCTCTACTGTCAAATTCTACAAAGCCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAAATGAAGTAATAAGAGAGGGAGCTCAGTGGCTACAGAAAACCTATGGCAACAATTTCCCTCAAAGTCATGAACTTCATGTAGAGAATGTCAAGCTAGGTCCCCAGCAATATTACATCGACTCATTCTTCCTTAACTTGAAGAGACTTCCTCTGGTGGGTGTAATTATCATACCTAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTTATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATACTGACAAATGGAGTGTCAAAGGAAATGAAACTTAGAGCAGAACTGATCAGTCACCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAATTTCTTGCAAATATGAGTCATGAATTAAGGACACCAATGGCAGCAGTAATCGGGTTACTCGACATTCTTATATCCGATGACCGTCTCACAAATGAGCAATGTGCAACAGTTACTCAAATAAGAAAATGCTCAACTGCCCTGCTTCGTCTACTTAATAACATCTTGGACCTAAGCAAGGTGGAATCTGGAAAATTGGTCCTAGAAGATGCAGAGTTTGACTTGGGGCGGGAGCTTGAAGGGCTTGTTGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTCTAGACTTGTCTGATGATATGCCAAAGCTAGTTCGGGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATTAAATTTACTCTATCCGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATGCTTGTGCTGATGATACAAATTTTCCACTAGAGCAAAAGAAATCACGGTGTTCACAGAAGAACAGAGCAAAGCAACATGAAAACCATGCAAAGAGGACTTCCAATAGAGATAACAAAATGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGATCCAAGTAAATGGGAATCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATCGTCAGAACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAAGGTCCAGGAACACTGATGCGATTATACTTGCGTCTGAGTGCACCTCTAGATGCCACAGAACAACATTGTCATGTAGATTTTGCTAACAAAGGCTTAGTGGTACTTCTTGCACTACATGGCAGTATGGGTCGATCTGTTACATCTAAGTGGCTACAGAAAAATGGGGTAGTCACTATGGAGGCATCAGAATGGAATGGATTAACACAAATTCTGAGGGTACTCTTTCATGCTAGAAGTTCAGCTCATAATAATGGCTTTGACGCAAATTATTCTGTACATGAAAATTTAAAGTCGAAACTACTGAGCATACAGGAATTGAGGAACCCAGTTTTTGTCATTGCTGTTGACATTGGACTACTTGATTTGAGCACGGATATATGGAAGGAACAGCTCAATTTCCTTCACAAATACTTTGGGAGAGCAAAATTCGTATGGATACTAAACCATGATTCCTCTAATACCATAAAGATGGAACTTTGCAGGAAAGGACACACACTGACAGTGAACAAACCCCTTTACAAAACAAAAATTCTTCATATTTTGGAAACCATTACAAAGGAAAGAAGTGATGAGCTACAAAAGAAAAATATGACTACTTCAAGAGCTACAGTGAAAGAGGGTTATTTGCATGAGAGTCTTGAGATTGATTATACTCAATGTGATGCTGCGAGCTCAGATGGTTCTGACACATCTGAAACGGGAGGTTCTAATCCTGTTTGTGAAAGCGGAGATAAACAAAGAGAAAAGGTAGTGAGATCCAAATCATCATCACAACACCAGATAAATAACTTAGTTGGATTAACAAACGGATATATGGAAGATAATAATCCTTGGAAGGAAGAGTTATGCCAGAGCAGCCTCAATTCTAACGATGTCACTGCGAATGACTCACCAAAATCATCCTCCACTAAACAAGCATTGTTTGCGAAAGGTACTCAAGGTGAAGATTCTGATTATGGCGAAACAAGAAGGGCCAGCAGCTCGAGCAGAACAGTGAGTGGAAAGAGATCTCTTGAAGGTCTGAGGATATTGCTTGCAGAAGATACACCAGTAATTCAAAGAGTTGCAACCATAATGCTTGAAAAAATGGGAGCCATTGTTGTAGCCGTAGGTGATGGACAACAAGCAGTGGATGCTCTGAATGGCATGCCTGGTGTTGAAGATTGTAGAAGGGAATCTCTCCTGAAGGAAAGAAACACAAGATCATCTCAAACTGAGATTCTCAGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCGGAAGTGGGAACTGGATTGCACATTCCAATTGTTGCTCTTACAGCCCATGCAATGTCATGTGATGAAGCCAAGTGCCTAGAGGTTGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTGATGGAGTCCACCATTCTTTCGCTCACACGAGGGACATCCTGA 3690 0.4168 MGANCRHVFDRLLSSSFATYWKKSTTPTGRRIFHRDVEKEEFQYANTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRCELLQRPILRMWNILNSTAEITTAQVKLSQYVIRSHTTNLATQADQVEMYDAMRAVTWALFASKKALNSITVKYKNGFVQAFHRDLKENNTFYIYSDLANYSMAASGHNEINSLSSHEAWNDKDIHGNKSAIWYREPLDPVSGEKIGKVMPIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSQEGFLLATSTNAPLLSNSTKPPKLKMAVDCENEVIREGAQWLQKTYGNNFPQSHELHVENVKLGPQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNACADDTNFPLEQKKSRCSQKNRAKQHENHAKRTSNRDNKMILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLRLSAPLDATEQHCHVDFANKGLVVLLALHGSMGRSVTSKWLQKNGVVTMEASEWNGLTQILRVLFHARSSAHNNGFDANYSVHENLKSKLLSIQELRNPVFVIAVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWILNHDSSNTIKMELCRKGHTLTVNKPLYKTKILHILETITKERSDELQKKNMTTSRATVKEGYLHESLEIDYTQCDAASSDGSDTSETGGSNPVCESGDKQREKVVRSKSSSQHQINNLVGLTNGYMEDNNPWKEELCQSSLNSNDVTANDSPKSSSTKQALFAKGTQGEDSDYGETRRASSSSRTVSGKRSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGQQAVDALNGMPGVEDCRRESLLKERNTRSSQTEILSCPPYDLILMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRGTS* 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01791 1229 ProSiteProfiles Histidine kinase domain profile. 493 751 IPR005467 -
Lapu3g01791 1229 ProSiteProfiles Response regulatory domain profile. 1079 1225 IPR001789 GO:0000160
Lapu3g01791 1229 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 541 748 IPR036890 -
Lapu3g01791 1229 MobiDBLite consensus disorder prediction 1026 1070 - -
Lapu3g01791 1229 Pfam His Kinase A (phospho-acceptor) domain 487 552 IPR003661 GO:0000155|GO:0007165
Lapu3g01791 1229 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 599 749 IPR003594 -
Lapu3g01791 1229 Pfam Response regulator receiver domain 1148 1218 IPR001789 GO:0000160
Lapu3g01791 1229 Gene3D - 554 752 IPR036890 -
Lapu3g01791 1229 Gene3D - 474 553 - -
Lapu3g01791 1229 MobiDBLite consensus disorder prediction 1026 1047 - -
Lapu3g01791 1229 MobiDBLite consensus disorder prediction 992 1007 - -
Lapu3g01791 1229 MobiDBLite consensus disorder prediction 958 977 - -
Lapu3g01791 1229 SMART HisKA_10 486 552 IPR003661 GO:0000155|GO:0007165
Lapu3g01791 1229 SUPERFAMILY CheY-like 1076 1225 IPR011006 -
Lapu3g01791 1229 CDD REC_hyHK_CKI1_RcsC-like 1080 1221 - -
Lapu3g01791 1229 PANTHER TWO-COMPONENT HISTIDINE KINASE 45 755 - -
Lapu3g01791 1229 MobiDBLite consensus disorder prediction 958 1007 - -
Lapu3g01791 1229 Gene3D - 1057 1223 - -
Lapu3g01791 1229 CDD HisKA 487 548 IPR003661 GO:0000155|GO:0007165
Lapu3g01791 1229 SMART HKATPase_4 599 751 IPR003594 -
Lapu3g01791 1229 FunFam Histidine kinase 1-like protein 474 553 - -
Lapu3g01791 1229 PRINTS Bacterial sensor protein C-terminal signature 694 704 IPR004358 GO:0016310|GO:0016772
Lapu3g01791 1229 PRINTS Bacterial sensor protein C-terminal signature 676 690 IPR004358 GO:0016310|GO:0016772
Lapu3g01791 1229 PRINTS Bacterial sensor protein C-terminal signature 711 729 IPR004358 GO:0016310|GO:0016772
Lapu3g01791 1229 PRINTS Bacterial sensor protein C-terminal signature 735 748 IPR004358 GO:0016310|GO:0016772
Lapu3g01791 1229 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 473 553 IPR036097 GO:0000155|GO:0007165
Lapu3g01791 1229 SMART REC_2 1078 1221 IPR001789 GO:0000160
Lapu3g01791 1229 MobiDBLite consensus disorder prediction 647 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01791 Lapu-Chr3 30650731 30657957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01791 6 1229 Histidine Kinase Gene Family AT2G17820 63.401 0.0 1547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu3g01791 HATPase_c 2.5e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01791 - - gmx:100776856 2214.88