Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01777 ATGACACGCGCGCTCAGACTCCTCCAATCTACGGCGGCGCCTCCGCCTGAGGCCGCCGCCGTCGAGTCCGACTTCGTGGTCATCCTGGCGGCCCTCCTCTGCGCGCTCATTTGCGTGGTGGGCCTCGTCGCCATCGCGCGCTGCGCCTGGCTCCGCCGGACACCGGCTTCCACAGGAGGCGGCCGATCTCCGACTCCGCCGGCTAATAAGGGCCTGAAGAAGAGGGTGGTGAACTCAATTCCGAAGTTCACGTACGCCGGCGACGGCGATCGGTGCAAATGGTCCGAGTGCCCTATCTGCCTGACAGAGTTCGCCGGCGGCGACGAGGTCCGCGTGCTGCCGCAGTGCGGACACGGGTTCCACGTGGCGTGCGTGGACACGTGGCTCTCGTCGCACTCCTCATGCCCCTCGTGCCGCGCGCCCTTTGTCGTCGCGCGCTGCCAGAAGTGCGGCCATTTCCCGGCTGTCGCCGCCGAAACCACCGAACGGGAGACAAAGCCCGGCGGCGGCTGCAATGCCAGTGATAGCGGTGCGAATGGTAATCGTAATGTAATTGTTACCCGCGGGTTTAGTAATTACGGTTTCTTGCCTTGA 594 0.6498 MTRALRLLQSTAAPPPEAAAVESDFVVILAALLCALICVVGLVAIARCAWLRRTPASTGGGRSPTPPANKGLKKRVVNSIPKFTYAGDGDRCKWSECPICLTEFAGGDEVRVLPQCGHGFHVACVDTWLSSHSSCPSCRAPFVVARCQKCGHFPAVAAETTERETKPGGGCNASDSGANGNRNVIVTRGFSNYGFLP* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01777 197 SUPERFAMILY RING/U-box 96 145 - -
Lapu3g01777 197 CDD RING-H2_EL5-like 96 139 - -
Lapu3g01777 197 SMART ring_2 97 138 IPR001841 -
Lapu3g01777 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 145 IPR013083 -
Lapu3g01777 197 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 16 151 - -
Lapu3g01777 197 Pfam Ring finger domain 96 139 IPR001841 -
Lapu3g01777 197 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01777 Lapu-Chr3 30266063 30267166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01777 1 150 C3H Transcription Factor Family AT1G20823 59.756 1.78e-60 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01777 - - gmx:100813341 303.138